RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 EHHADHQ08426 723 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 EFEMP1Q12805 493 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 HNRNPA1L2Q32P51 320 aaKnown RBP18.83■□□□□ 0.6
CLK3-227ENST00000570296 CLEC20AQ6ZU45 233 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 PRPF39Q86UA1 669 aaKnown RBP18.83■□□□□ 0.6
CLK3-227ENST00000570296 CRYBG2Q8N1P7 616 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 FAM26EQ8N5C1 309 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 OR14C36Q8NHC7 312 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 DNAJC19Q96DA6 116 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 APOLD1Q96LR9 279 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 MTG2Q9H4K7 406 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 STRIP2Q9ULQ0 834 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 LIMCH1Q9UPQ0 1083 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 DMTF1Q9Y222 760 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 ENTPD2Q9Y5L3 495 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 SLC8A1P32418 973 aa18.82■□□□□ 0.6
CLK3-227ENST00000570296 KIF11P52732 1056 aa18.82■□□□□ 0.6
CLK3-227ENST00000570296 PPP2CBP62714 309 aa18.82■□□□□ 0.6
CLK3-227ENST00000570296 PPP2CAP67775 309 aa18.82■□□□□ 0.6
CLK3-227ENST00000570296 ARID5BQ14865 1188 aa18.82■□□□□ 0.6
CLK3-227ENST00000570296 PSMD6Q15008 389 aa18.82■□□□□ 0.6
CLK3-227ENST00000570296 WDR36Q8NI36 951 aaKnown RBP18.82■□□□□ 0.6
CLK3-227ENST00000570296 JAKMIP2Q96AA8 810 aa18.82■□□□□ 0.6
CLK3-227ENST00000570296 PLD4Q96BZ4 506 aa18.82■□□□□ 0.6
CLK3-227ENST00000570296 FGFBP2Q9BYJ0 223 aa18.82■□□□□ 0.6
CLK3-227ENST00000570296 SLC25A18Q9H1K4 315 aa18.82■□□□□ 0.6
CLK3-227ENST00000570296 UCKL1Q9NWZ5 548 aa18.82■□□□□ 0.6
CLK3-227ENST00000570296 NLGN3Q9NZ94 848 aa18.82■□□□□ 0.6
CLK3-227ENST00000570296 MARCH2Q9P0N8 246 aa18.82■□□□□ 0.6
CLK3-227ENST00000570296 LY6G6EA0A0G2JKS1 128 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 ITGA2BP08514 1039 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 GIMD1P0DJR0 217 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 ST8SIA6P61647 398 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 FOXK1P85037 733 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 STAT4Q14765 748 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 SNRNP35Q16560 246 aaKnown RBP18.81■□□□□ 0.6
CLK3-227ENST00000570296 ZNF667Q5HYK9 610 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 MMAAQ8IVH4 418 aaKnown RBP18.81■□□□□ 0.6
CLK3-227ENST00000570296 AADATQ8N5Z0 425 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 IFI44Q8TCB0 444 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 MYO19Q96H55 970 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 FAM49BQ9NUQ9 324 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 KLHL11Q9NVR0 708 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 ARHGAP20Q9P2F6 1191 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 STK17AQ9UEE5 414 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 U3KQA8 63 aa18.81■□□□□ 0.6
CLK3-227ENST00000570296 TBC1D3DA0A087WVF3 549 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 TBC1D3IA0A087WXS9 549 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 TBC1D3EA0A087X179 549 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 TBC1D3KA0A087X1G2 549 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 TBC1D3FA6NER0 549 aaPredicted RBP18.8■□□□□ 0.6
CLK3-227ENST00000570296 TBC1D3LB9A6J9 549 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 TNFSF15O95150 251 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 ADH1BP00325 375 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 TBC1D3HP0C7X1 549 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 THEGLP0DJG4 465 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 ZNF699Q32M78 642 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 C9orf64Q5T6V5 341 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 TBC1D3GQ6DHY5 549 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 TBC1D3CQ6IPX1 549 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 SCARA5Q6ZMJ2 495 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 RBM44Q6ZP01 1051 aaKnown RBP18.8■□□□□ 0.6
CLK3-227ENST00000570296 TBC1D3Q8IZP1 549 aaPredicted RBP18.8■□□□□ 0.6
CLK3-227ENST00000570296 KDM1BQ8NB78 822 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 CCDC127Q96BQ5 260 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 TMA16Q96EY4 203 aaKnown RBP18.8■□□□□ 0.6
CLK3-227ENST00000570296 SDCBP2Q9H190 292 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 KDM4CQ9H3R0 1056 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 GEMIN8Q9NWZ8 242 aaKnown RBP18.8■□□□□ 0.6
CLK3-227ENST00000570296 CYTH4Q9UIA0 394 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 KIF3AQ9Y496 699 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 USP3Q9Y6I4 520 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 RP1P56715 2156 aa18.8■□□□□ 0.6
CLK3-227ENST00000570296 UBE4BO95155 1302 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 LRBAP50851 2863 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 SLC12A8A0AV02 714 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 FRMD3A2A2Y4 597 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 TARSL2A2RTX5 802 aaKnown RBP18.79■□□□□ 0.6
CLK3-227ENST00000570296 RIOK3O14730 519 aaKnown RBP18.79■□□□□ 0.6
CLK3-227ENST00000570296 TCEA3O75764 348 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 PIAS2O75928 621 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 TRIM21P19474 475 aaKnown RBP18.79■□□□□ 0.6
CLK3-227ENST00000570296 C5AR1P21730 350 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 TGM2P21980 687 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 ADORA2BP29275 332 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 CYP24A1Q07973 514 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 TRIP4Q15650 581 aaPredicted RBP18.79■□□□□ 0.6
CLK3-227ENST00000570296 MCTP1Q6DN14 999 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 UNC93AQ86WB7 457 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 C12orf29Q8N999 325 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 TPCN2Q8NHX9 752 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 TTC17Q96AE7 1141 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 KLHDC7BQ96G42 594 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 DUSP23Q9BVJ7 150 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 EPN3Q9H201 632 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 STOML2Q9UJZ1 356 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 CACNA1DQ01668 2161 aa18.79■□□□□ 0.6
CLK3-227ENST00000570296 BLACEA4D250 179 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 PMS2P1A4D2B8 440 aa18.78■□□□□ 0.6
CLK3-227ENST00000570296 NEMP2A6NFY4 417 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms