RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 FAM151AQ8WW52 585 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 SLC35C1Q96A29 364 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 ANKFY1Q9P2R3 1169 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 DPP7Q9UHL4 492 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 FAM172BPA6NC97 362 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 M0QX08 132 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 DHX15O43143 795 aaKnown RBP11.11□□□□□ -0.63
CLK3-226ENST00000569406 KRT8P05787 483 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 ARP10275 920 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 ALAS1P13196 640 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 ITGB5P18084 799 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 PTGER2P43116 358 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 RPL21P46778 160 aaKnown RBP11.11□□□□□ -0.63
CLK3-226ENST00000569406 PRKCQQ04759 706 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 MAPK11Q15759 364 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 BNC2Q6ZN30 1099 aaPredicted RBP11.11□□□□□ -0.63
CLK3-226ENST00000569406 C4orf33Q8N1A6 199 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 HEXIM2Q96MH2 286 aaKnown RBP11.11□□□□□ -0.63
CLK3-226ENST00000569406 NLRP4Q96MN2 994 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 CFAP57Q96MR6 1250 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 TMEM79Q9BSE2 394 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.11□□□□□ -0.63
CLK3-226ENST00000569406 NTN4Q9HB63 628 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 ALG13Q9NP73 1137 aaKnown RBP11.11□□□□□ -0.63
CLK3-226ENST00000569406 BRD7Q9NPI1 651 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 CAB39Q9Y376 341 aaPredicted RBP11.11□□□□□ -0.63
CLK3-226ENST00000569406 MEI4A8MW99 385 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 KIAA0391O15091 583 aaKnown RBP11.11□□□□□ -0.63
CLK3-226ENST00000569406 DENRO43583 198 aaKnown RBP11.11□□□□□ -0.63
CLK3-226ENST00000569406 EXTL3O43909 919 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 RNGTTO60942 597 aaKnown RBP11.11□□□□□ -0.63
CLK3-226ENST00000569406 GPD2P43304 727 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 CTTNQ14247 550 aaKnown RBP11.11□□□□□ -0.63
CLK3-226ENST00000569406 ARHGAP44Q17R89 818 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 CLEC4DQ8WXI8 215 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 CDKL2Q92772 493 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 TEPSINQ96N21 525 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 SYT11Q9BT88 431 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 TRPV6Q9H1D0 765 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 TRAV6A0A075B6T7 132 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 OR5K4A6NMS3 321 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 BHMG1C9JSJ3 638 aaPredicted RBP11.1□□□□□ -0.63
CLK3-226ENST00000569406 MTSS1O43312 755 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 PLA2G6O60733 806 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 FOSP01100 380 aaPredicted RBP11.1□□□□□ -0.63
CLK3-226ENST00000569406 NR2F2P24468 414 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 ZNF211Q13398 564 aaPredicted RBP11.1□□□□□ -0.63
CLK3-226ENST00000569406 HIC1Q14526 733 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 PPP1R3AQ16821 1122 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 GPR107Q5VW38 600 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 ZNF571Q7Z3V5 609 aaPredicted RBP11.1□□□□□ -0.63
CLK3-226ENST00000569406 TERB1Q8NA31 727 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 IL31RAQ8NI17 732 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 DEPDC7Q96QD5 511 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 LPIN3Q9BQK8 851 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 MAT2BQ9NZL9 334 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 NAALADL1Q9UQQ1 740 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 GNEQ9Y223 722 aaKnown RBP11.1□□□□□ -0.63
CLK3-226ENST00000569406 H0YC42 278 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 FCHO1O14526 889 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 SERPINB1P30740 379 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 NAMPTP43490 491 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 NDST2P52849 883 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 TPD52P55327 224 aaPredicted RBP11.1□□□□□ -0.63
CLK3-226ENST00000569406 UBXN2AP68543 259 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 EN1Q05925 392 aaPredicted RBP11.1□□□□□ -0.63
CLK3-226ENST00000569406 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.1□□□□□ -0.63
CLK3-226ENST00000569406 PPP1R26Q5T8A7 1209 aaPredicted RBP11.1□□□□□ -0.63
CLK3-226ENST00000569406 ATG14Q6ZNE5 492 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 CCDC33Q8N5R6 958 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 CCNYL1Q8N7R7 359 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 BEND7Q8N7W2 519 aaPredicted RBP11.1□□□□□ -0.63
CLK3-226ENST00000569406 KIAA1958Q8N8K9 716 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 MTMR14Q8NCE2 650 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 OR5H6Q8NGV6 325 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 PDCD6IPQ8WUM4 868 aaKnown RBP11.1□□□□□ -0.63
CLK3-226ENST00000569406 ALPK1Q96QP1 1244 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 USB1Q9BQ65 265 aaKnown RBP11.1□□□□□ -0.63
CLK3-226ENST00000569406 HIPK3Q9H422 1215 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 IFT22Q9H7X7 185 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 HDAC9Q9UKV0 1011 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 RNF112Q9ULX5 631 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 BCS1LQ9Y276 419 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 C12orf71A8MTZ7 269 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 MSI1O43347 362 aaKnown RBP11.1□□□□□ -0.63
CLK3-226ENST00000569406 KRT15P19012 456 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 ITIH1P19827 911 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 SLC26A2P50443 739 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 GHRHRQ02643 423 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 NME3Q13232 169 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 AGAP7PQ5VUJ5 663 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 TRUB1Q8WWH5 349 aaKnown RBP11.1□□□□□ -0.63
CLK3-226ENST00000569406 VPS33AQ96AX1 596 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 POLE4Q9NR33 117 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 IGSF5Q9NSI5 407 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 SLC45A1Q9Y2W3 748 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 BOLA1Q9Y3E2 137 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 SNX8Q9Y5X2 465 aa11.1□□□□□ -0.63
CLK3-226ENST00000569406 DOCK5Q9H7D0 1870 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 ZNF839A8K0R7 811 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms