RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CPA5Q8WXQ8 436 aa20.99■□□□□ 0.95
CLK3-225ENST00000569063 PIGKQ92643 395 aa20.99■□□□□ 0.95
CLK3-225ENST00000569063 SPAG5Q96R06 1193 aa20.99■□□□□ 0.95
CLK3-225ENST00000569063 ITM2CQ9NQX7 267 aa20.99■□□□□ 0.95
CLK3-225ENST00000569063 TMEM51Q9NW97 253 aa20.99■□□□□ 0.95
CLK3-225ENST00000569063 USP36Q9P275 1121 aaKnown RBP20.99■□□□□ 0.95
CLK3-225ENST00000569063 INTS6Q9UL03 887 aaKnown RBP20.99■□□□□ 0.95
CLK3-225ENST00000569063 SDK1Q7Z5N4 2213 aa20.98■□□□□ 0.95
CLK3-225ENST00000569063 MUC22E2RYF6 1773 aaPredicted RBP20.98■□□□□ 0.95
CLK3-225ENST00000569063 H0Y626 953 aa20.98■□□□□ 0.95
CLK3-225ENST00000569063 CYP1A1P04798 512 aaPredicted RBP20.98■□□□□ 0.95
CLK3-225ENST00000569063 HLA-EP13747 358 aa20.98■□□□□ 0.95
CLK3-225ENST00000569063 CHRNB2P17787 502 aa20.98■□□□□ 0.95
CLK3-225ENST00000569063 RNASE9P60153 205 aaKnown RBP20.98■□□□□ 0.95
CLK3-225ENST00000569063 TTC39BQ5VTQ0 682 aaPredicted RBP20.98■□□□□ 0.95
CLK3-225ENST00000569063 OTUD1Q5VV17 481 aaPredicted RBP20.98■□□□□ 0.95
CLK3-225ENST00000569063 PEAR1Q5VY43 1037 aaPredicted RBP20.98■□□□□ 0.95
CLK3-225ENST00000569063 NAA35Q5VZE5 725 aa20.98■□□□□ 0.95
CLK3-225ENST00000569063 LYSMD4Q5XG99 296 aa20.98■□□□□ 0.95
CLK3-225ENST00000569063 TCEAL6Q6IPX3 200 aa20.98■□□□□ 0.95
CLK3-225ENST00000569063 CAVIN1Q6NZI2 390 aaKnown RBP20.98■□□□□ 0.95
CLK3-225ENST00000569063 SYT12Q8IV01 421 aa20.98■□□□□ 0.95
CLK3-225ENST00000569063 SLC20A1Q8WUM9 679 aa20.98■□□□□ 0.95
CLK3-225ENST00000569063 PRCCQ92733 491 aaPredicted RBP20.98■□□□□ 0.95
CLK3-225ENST00000569063 TCEAL3Q969E4 200 aa20.98■□□□□ 0.95
CLK3-225ENST00000569063 PGAP3Q96FM1 320 aaPredicted RBP20.98■□□□□ 0.95
CLK3-225ENST00000569063 SIPA1Q96FS4 1042 aa20.98■□□□□ 0.95
CLK3-225ENST00000569063 PCMTD1Q96MG8 357 aaPredicted RBP20.98■□□□□ 0.95
CLK3-225ENST00000569063 ADAM33Q9BZ11 813 aa20.98■□□□□ 0.95
CLK3-225ENST00000569063 KIAA1522Q9P206 1035 aaPredicted RBP20.98■□□□□ 0.95
CLK3-225ENST00000569063 STAP1Q9ULZ2 295 aa20.98■□□□□ 0.95
CLK3-225ENST00000569063 CKAP5Q14008 2032 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 KHNYNO15037 678 aaKnown RBP20.97■□□□□ 0.95
CLK3-225ENST00000569063 IGLV3-19P01714 112 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 ASLP04424 464 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 ATP1A3P13637 1013 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 HOXD12P35452 270 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 CSKP41240 450 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 CXCR3P49682 368 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 FMO1Q01740 532 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 SLC25A52Q3SY17 297 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 PITRM1Q5JRX3 1037 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 RABGAP1LQ5R372 815 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 FAM102AQ5T9C2 384 aaPredicted RBP20.97■□□□□ 0.95
CLK3-225ENST00000569063 ARMCX6Q7L4S7 300 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 ARCQ7LC44 396 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 OR2T3Q8NH03 318 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 MYO19Q96H55 970 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 CD93Q9NPY3 652 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 PIGVQ9NUD9 493 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 TMEM74BQ9NUR3 256 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 EVLQ9UI08 416 aaPredicted RBP20.97■□□□□ 0.95
CLK3-225ENST00000569063 TMEM59LQ9UK28 342 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 PILRBQ9UKJ0 227 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 NUP205Q92621 2012 aa20.97■□□□□ 0.95
CLK3-225ENST00000569063 F9P00740 461 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 TFE3P19532 575 aaPredicted RBP20.96■□□□□ 0.95
CLK3-225ENST00000569063 MMP8P22894 467 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 CD6P30203 668 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 TPMTP51580 245 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 ZNF33AQ06730 810 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 SLC12A1Q13621 1099 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 AUHQ13825 339 aaKnown RBP20.96■□□□□ 0.95
CLK3-225ENST00000569063 C2CD6Q53TS8 623 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 BRMS1LQ5PSV4 323 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 STPG1Q5TH74 334 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 FBXL22Q6P050 247 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 TRIM72Q6ZMU5 477 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 MMS22LQ6ZRQ5 1243 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 DHX40Q8IX18 779 aaKnown RBP20.96■□□□□ 0.95
CLK3-225ENST00000569063 DEFB119Q8N690 84 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 KDM1BQ8NB78 822 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 ZNF419Q96HQ0 510 aaPredicted RBP20.96■□□□□ 0.95
CLK3-225ENST00000569063 WDCPQ9H6R7 721 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 FBRSQ9HAH7 460 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 PRSS16Q9NQE7 514 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 ARHGEF38Q9NXL2 777 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 WSB2Q9NYS7 404 aaPredicted RBP20.96■□□□□ 0.95
CLK3-225ENST00000569063 SUN2Q9UH99 717 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 HS3ST4Q9Y661 456 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 TNRC6BQ9UPQ9 1833 aaKnown RBP20.96■□□□□ 0.95
CLK3-225ENST00000569063 CEP250Q9BV73 2442 aa20.96■□□□□ 0.95
CLK3-225ENST00000569063 A0A1B0GVM2 712 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 LNP1A1A4G5 178 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 DCDC2BA2VCK2 349 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 TCAF2A6NFQ2 919 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 SMTNL1A8MU46 457 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 PATE3B3GLJ2 98 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 NDUFS2O75306 463 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 PAGE1O75459 146 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 MOCS3O95396 460 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 ITPKAP23677 461 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 OXTRP30559 389 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 SULT1E1P49888 294 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 ARID5BQ14865 1188 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 C5orf22Q49AR2 442 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 SND1Q7KZF4 910 aaKnown RBP eCLIP20.95■□□□□ 0.94
CLK3-225ENST00000569063 SLC41A1Q8IVJ1 513 aa20.95■□□□□ 0.94
CLK3-225ENST00000569063 CCAR2Q8N163 923 aaKnown RBP20.95■□□□□ 0.94
CLK3-225ENST00000569063 ZNF366Q8N895 744 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms