RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CCNIQ14094 377 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 USP10Q14694 798 aaKnown RBP14.85□□□□□ -0.03
VPS35-210ENST00000568784 KRT80Q6KB66 452 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 PAOXQ6QHF9 649 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 MCUQ8NE86 351 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 MIPOL1Q8TD10 442 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 B4GALT4O60513 344 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 ARIH2O95376 493 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 ITGAXP20702 1163 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 C6orf52Q5T4I8 152 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 MBLAC2Q68D91 279 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 PLD6Q8N2A8 252 aaKnown RBP14.85□□□□□ -0.03
VPS35-210ENST00000568784 PCDH20Q8N6Y1 951 aaKnown RBP14.85□□□□□ -0.03
VPS35-210ENST00000568784 UBR7Q8N806 425 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 EXT2Q93063 718 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 OMDQ99983 421 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 NIFKQ9BYG3 293 aaKnown RBP14.85□□□□□ -0.03
VPS35-210ENST00000568784 SNX25Q9H3E2 840 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 PRDM12Q9H4Q4 367 aa14.85□□□□□ -0.03
VPS35-210ENST00000568784 ZNFX1Q9P2E3 1918 aaKnown RBP14.85□□□□□ -0.03
VPS35-210ENST00000568784 HMX2A2RU54 273 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 PPEF2O14830 753 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 BIRC5O15392 142 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 SEC24DO94855 1032 aaPredicted RBP14.84□□□□□ -0.03
VPS35-210ENST00000568784 GRK2P25098 689 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 SPRP35270 261 aaPredicted RBP14.84□□□□□ -0.03
VPS35-210ENST00000568784 HDAC4P56524 1084 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 BHLHE22Q8NFJ8 381 aaPredicted RBP14.84□□□□□ -0.03
VPS35-210ENST00000568784 LRRC39Q96DD0 335 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 ZNF778Q96MU6 729 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 CSPG4P5Q96PW8 444 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 MRPL1Q9BYD6 325 aaKnown RBP14.84□□□□□ -0.03
VPS35-210ENST00000568784 CAAP1Q9H8G2 361 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 LRRC4Q9HBW1 653 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 SLX4Q8IY92 1834 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 SIPA1L1O43166 1804 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 FAM159BA6NKW6 160 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 MFSD11O43934 449 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 TPST1O60507 370 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 ATG7O95352 703 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 CYP3A5P20815 502 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 GP5P40197 560 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 SNX16P57768 344 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 SEPT6Q14141 434 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 KCTD2Q14681 263 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 PCLAFQ15004 111 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 TMCO4Q5TGY1 634 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 CYP2R1Q6VVX0 501 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 ZNF354CQ86Y25 554 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 TP53INP2Q8IXH6 220 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 NAT14Q8WUY8 206 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 TEPSINQ96N21 525 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 TBCBQ99426 244 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 CYP4F12Q9HCS2 524 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 DTLQ9NZJ0 730 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 GPC4O75487 556 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 PIGNO95427 931 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 STAMBPO95630 424 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 INSRRP14616 1297 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 IL4RP24394 825 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 HMGB2P26583 209 aaKnown RBP14.84□□□□□ -0.03
VPS35-210ENST00000568784 CRABP2P29373 138 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 KIZQ2M2Z5 673 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 BNC2Q6ZN30 1099 aaPredicted RBP14.84□□□□□ -0.03
VPS35-210ENST00000568784 SH2D5Q6ZV89 423 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 PDSS2Q86YH6 399 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 FBXW8Q8N3Y1 598 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 MFSD3Q96ES6 412 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 OTUD5Q96G74 571 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 P2RY11Q96G91 374 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 DCUN1D1Q96GG9 259 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 ILKAPQ9H0C8 392 aaPredicted RBP14.84□□□□□ -0.03
VPS35-210ENST00000568784 DPEP3Q9H4B8 488 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 GPAMQ9HCL2 828 aa14.84□□□□□ -0.03
VPS35-210ENST00000568784 CATSPERGQ6ZRH7 1159 aa14.83□□□□□ -0.03
VPS35-210ENST00000568784 TTC30AQ86WT1 665 aa14.83□□□□□ -0.03
VPS35-210ENST00000568784 KCTD15Q96SI1 283 aaPredicted RBP14.83□□□□□ -0.03
VPS35-210ENST00000568784 MPHOSPH6Q99547 160 aaKnown RBP14.83□□□□□ -0.03
VPS35-210ENST00000568784 OCEL1Q9H607 264 aa14.83□□□□□ -0.03
VPS35-210ENST00000568784 LZTS1Q9Y250 596 aa14.83□□□□□ -0.03
VPS35-210ENST00000568784 FOCADQ5VW36 1801 aa14.83□□□□□ -0.03
VPS35-210ENST00000568784 GREB1LQ9C091 1923 aaPredicted RBP14.83□□□□□ -0.04
VPS35-210ENST00000568784 A0A0A0MRY4 1105 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 BCLAF3A2AJT9 711 aaKnown RBP14.83□□□□□ -0.04
VPS35-210ENST00000568784 M0QYT0 321 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 TK2O00142 265 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 ZFXP17010 805 aaPredicted RBP14.83□□□□□ -0.04
VPS35-210ENST00000568784 SLC12A2P55011 1212 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 PDK1Q15118 436 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 ANKRD20A4Q4UJ75 823 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 TREML2Q5T2D2 321 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 CATSPER4Q7RTX7 472 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 DEFB106AQ8N104 65 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 JADE3Q92613 823 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 CERS2Q96G23 380 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 SPATA13Q96N96 652 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 IL1RL2Q9HB29 575 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 PRMT7Q9NVM4 692 aaPredicted RBP14.83□□□□□ -0.04
VPS35-210ENST00000568784 AP4B1Q9Y6B7 739 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 ZBTB14O43829 449 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms