RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ADGRF1Q5T601 910 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 PPP1R26Q5T8A7 1209 aaPredicted RBP7.62□□□□□ -1.19
VPS4A-203ENST00000564399 NAPEPLDQ6IQ20 393 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 SND1Q7KZF4 910 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS4A-203ENST00000564399 KANSL1Q7Z3B3 1105 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 TMC6Q7Z403 805 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 PRPF39Q86UA1 669 aaKnown RBP7.62□□□□□ -1.19
VPS4A-203ENST00000564399 SPATS2Q86XZ4 545 aaKnown RBP7.62□□□□□ -1.19
VPS4A-203ENST00000564399 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS4A-203ENST00000564399 MFSD2AQ8NA29 543 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 RNF139Q8WU17 664 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 VCPIP1Q96JH7 1222 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 HEXIM2Q96MH2 286 aaKnown RBP7.62□□□□□ -1.19
VPS4A-203ENST00000564399 IMPG2Q9BZV3 1241 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 ABCG4Q9H172 646 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 OSBPL2Q9H1P3 480 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 TNMDQ9H2S6 317 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 POLR1BQ9H9Y6 1135 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 OLA1Q9NTK5 396 aaKnown RBP7.62□□□□□ -1.19
VPS4A-203ENST00000564399 STIM2Q9P246 746 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 CGNQ9P2M7 1197 aaKnown RBP7.62□□□□□ -1.19
VPS4A-203ENST00000564399 TFIP11Q9UBB9 837 aaKnown RBP7.62□□□□□ -1.19
VPS4A-203ENST00000564399 FZD4Q9ULV1 537 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 TPX2Q9ULW0 747 aaKnown RBP7.62□□□□□ -1.19
VPS4A-203ENST00000564399 LRRK2Q5S007 2527 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 SPTBN1Q01082 2364 aaKnown RBP7.62□□□□□ -1.19
VPS4A-203ENST00000564399 CREBBPQ92793 2442 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 TRPM6Q9BX84 2022 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 FFAR2O15552 330 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 OPA1O60313 960 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 CSO75390 466 aaKnown RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 DXOO77932 396 aaKnown RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 ASS1P00966 412 aaKnown RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 HLA-DRAP01903 254 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 ASLP04424 464 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 SLFN14P0C7P3 912 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 GOT1P17174 413 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 RBMS1P29558 406 aaKnown RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 MAT2AP31153 395 aaKnown RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 CSKP41240 450 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 ADPRHP54922 357 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 SLC8A3P57103 927 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 PPP2CBP62714 309 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 PPP2CAP67775 309 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 DLG4P78352 724 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 CLDN10P78369 228 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 SRSF1Q07955 248 aaKnown RBP eCLIP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 INCA1Q0VD86 236 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 STAT4Q14765 748 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 RABEP1Q15276 862 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 KNOP1Q1ED39 458 aaKnown RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 HNRNPA1L2Q32P51 320 aaKnown RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 ZACNQ401N2 412 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 ZNF394Q53GI3 561 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 C6orf132Q5T0Z8 1188 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 FAM173BQ6P4H8 233 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 RFWD3Q6PCD5 774 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 CCDC81Q6ZN84 652 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 SV2AQ7L0J3 742 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 KIAA0907Q7Z7F0 614 aaPredicted RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 MFN1Q8IWA4 741 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 CCDC117Q8IWD4 279 aaPredicted RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 C12orf56Q8IXR9 622 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 WFDC5Q8TCV5 224 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 SNRNP27Q8WVK2 155 aaKnown RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 NDRG1Q92597 394 aaKnown RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 CYP3A43Q9HB55 503 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 SLC39A2Q9NP94 309 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 KBTBD4Q9NVX7 518 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 SFMBT1Q9UHJ3 866 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 HBS1LQ9Y450 684 aaKnown RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 CEP83Q9Y592 693 aa7.61□□□□□ -1.19
VPS4A-203ENST00000564399 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 NYNRINQ9P2P1 1898 aaKnown RBP7.61□□□□□ -1.19
VPS4A-203ENST00000564399 EDDM13A0A1B0GTR0 161 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 GOLGA6L7A0A1B0GV03 622 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 A0A1B0GVM2 712 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 TARSL2A2RTX5 802 aaKnown RBP7.6□□□□□ -1.19
VPS4A-203ENST00000564399 TYW5A2RUC4 315 aaKnown RBP7.6□□□□□ -1.19
VPS4A-203ENST00000564399 TTC34A8MYJ7 566 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 K7ENP7 123 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 MSI1O43347 362 aaKnown RBP7.6□□□□□ -1.19
VPS4A-203ENST00000564399 LATS1O95835 1130 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 ZBED1O96006 694 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 ADH1BP00325 375 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 IL1BP01584 269 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 C5AR1P21730 350 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 SGSHP51688 502 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 TKTL1P51854 596 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 OVGP1Q12889 678 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 ZSCAN23Q3MJ62 389 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 POM121L1PQ3SYA9 428 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 SGO2Q562F6 1265 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 C3orf38Q5JPI3 329 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 COLEC12Q5KU26 742 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 C9orf64Q5T6V5 341 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 PIK3R6Q5UE93 754 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 CDCP2Q5VXM1 449 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 RNF219Q5W0B1 726 aaPredicted RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms