RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ZNF852Q6ZMS4 543 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 TPCN2Q8NHX9 752 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 SHDQ96IW2 340 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 LMLNQ96KR4 655 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 XPO6Q96QU8 1125 aaKnown RBP22.47■■□□□ 1.19
SNX1-210ENST00000560260 NCAPGQ9BPX3 1015 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 MPP6Q9NZW5 540 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 OR12D3Q9UGF7 316 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 LCMT1Q9UIC8 334 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 DOCK4Q8N1I0 1966 aa22.46■■□□□ 1.19
SNX1-210ENST00000560260 FAM86C2PA6NEL3 165 aa22.46■■□□□ 1.19
SNX1-210ENST00000560260 SRGAP2O75044 1071 aa22.46■■□□□ 1.19
SNX1-210ENST00000560260 LUC7L3O95232 432 aaKnown RBP22.46■■□□□ 1.19
SNX1-210ENST00000560260 EGFP01133 1207 aa22.46■■□□□ 1.19
SNX1-210ENST00000560260 FZD5Q13467 585 aa22.46■■□□□ 1.19
SNX1-210ENST00000560260 GRAMD4Q6IC98 578 aa22.46■■□□□ 1.19
SNX1-210ENST00000560260 CCAR2Q8N163 923 aaKnown RBP22.46■■□□□ 1.19
SNX1-210ENST00000560260 FLCNQ8NFG4 579 aa22.46■■□□□ 1.19
SNX1-210ENST00000560260 PNKPQ96T60 521 aa22.46■■□□□ 1.19
SNX1-210ENST00000560260 DHX35Q9H5Z1 703 aaKnown RBP22.46■■□□□ 1.19
SNX1-210ENST00000560260 ARHGEF4Q9NR80 690 aa22.46■■□□□ 1.19
SNX1-210ENST00000560260 RBM12Q9NTZ6 932 aaKnown RBP22.46■■□□□ 1.19
SNX1-210ENST00000560260 DEC1Q9P2X7 70 aa22.46■■□□□ 1.19
SNX1-210ENST00000560260 ZNF212Q9UDV6 495 aa22.46■■□□□ 1.19
SNX1-210ENST00000560260 A0A1B0GVM2 712 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 TCAF2A6NFQ2 919 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 NRDCO43847 1150 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 CHRM1P11229 460 aaPredicted RBP22.45■■□□□ 1.18
SNX1-210ENST00000560260 COMTP21964 271 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 HLA-FP30511 346 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 L1CAMP32004 1257 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 GJC1P36383 396 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 SSR1P43307 286 aaKnown RBP22.45■■□□□ 1.18
SNX1-210ENST00000560260 DGKGP49619 791 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 AMPD2Q01433 879 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 KIF5AQ12840 1032 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 UBXN2BQ14CS0 331 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 ATP13A4Q4VNC1 1196 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 FSCBQ5H9T9 825 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 ACBD5Q5T8D3 534 aaPredicted RBP22.45■■□□□ 1.18
SNX1-210ENST00000560260 TTC39BQ5VTQ0 682 aaPredicted RBP22.45■■□□□ 1.18
SNX1-210ENST00000560260 CXorf57Q6NSI4 855 aaKnown RBP22.45■■□□□ 1.18
SNX1-210ENST00000560260 C11orf63Q6NUN7 778 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 CCDC105Q8IYK2 499 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 CARNMT1Q8N4J0 409 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 TERB1Q8NA31 727 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 OR52K2Q8NGK3 314 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 TEKT4Q8WW24 435 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 HSPH1Q92598 858 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 KLHL11Q9NVR0 708 aa22.45■■□□□ 1.18
SNX1-210ENST00000560260 MACROD2A1Z1Q3 448 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 TYW5A2RUC4 315 aaKnown RBP22.44■■□□□ 1.18
SNX1-210ENST00000560260 GRID2IPA4D2P6 1211 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 PALM2-AKAP2B1ALY0 433 aaPredicted RBP22.44■■□□□ 1.18
SNX1-210ENST00000560260 KAT7O95251 611 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 MOCS3O95396 460 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 CCDC175P0C221 793 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 HOXC13P31276 330 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 CD70P32970 193 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 CCINQ13939 588 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 GEN1Q17RS7 908 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 C1orf228Q6PIY5 440 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 LRRC31Q6UY01 552 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 CHST9Q7L1S5 443 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 TFAP2DQ7Z6R9 452 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 MFN1Q8IWA4 741 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 DDX51Q8N8A6 666 aaKnown RBP eCLIP22.44■■□□□ 1.18
SNX1-210ENST00000560260 LRRC57Q8N9N7 239 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 PJA1Q8NG27 643 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 TBC1D31Q96DN5 1066 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 SLC2A11Q9BYW1 496 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.44■■□□□ 1.18
SNX1-210ENST00000560260 PPARGC1AQ9UBK2 798 aaKnown RBP22.44■■□□□ 1.18
SNX1-210ENST00000560260 SLC27A6Q9Y2P4 619 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 PPP2R2CQ9Y2T4 447 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 ALG6Q9Y672 507 aa22.44■■□□□ 1.18
SNX1-210ENST00000560260 CUL9Q8IWT3 2517 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 PRRT4C9JH25 899 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 CREB3O43889 395 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 CHRNB1P11230 501 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 ARSEP51690 589 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 CDH4P55283 916 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 LMAN2Q12907 356 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 DPYSL2Q16555 572 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 BOLA3Q53S33 107 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 NLRP14Q86W24 1093 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 PSTKQ8IV42 348 aaKnown RBP22.43■■□□□ 1.18
SNX1-210ENST00000560260 FIBINQ8TAL6 211 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 ZYG11BQ9C0D3 744 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 MFSD1Q9H3U5 465 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 PCDH18Q9HCL0 1135 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 ABCB8Q9NUT2 735 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 HCN2Q9UL51 889 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 CAPN6Q9Y6Q1 641 aa22.43■■□□□ 1.18
SNX1-210ENST00000560260 FAM170BA6NMN3 283 aa22.42■■□□□ 1.18
SNX1-210ENST00000560260 K7EQS6 105 aa22.42■■□□□ 1.18
SNX1-210ENST00000560260 PI15O43692 258 aa22.42■■□□□ 1.18
SNX1-210ENST00000560260 APODP05090 189 aa22.42■■□□□ 1.18
SNX1-210ENST00000560260 GRIA2P42262 883 aa22.42■■□□□ 1.18
SNX1-210ENST00000560260 GRSF1Q12849 480 aaKnown RBP eCLIP22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms