RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 CSH2P0DML3 217 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 HMGA1P17096 107 aaKnown RBP13.05□□□□□ -0.32
USP3-213ENST00000559711 EN2P19622 333 aaPredicted RBP13.05□□□□□ -0.32
USP3-213ENST00000559711 GARSP41250 739 aaKnown RBP13.05□□□□□ -0.32
USP3-213ENST00000559711 TUBP50607 506 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 KPNA1P52294 538 aaPredicted RBP13.05□□□□□ -0.32
USP3-213ENST00000559711 SKOR1P84550 965 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 CDK16Q00536 496 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 MTA1Q13330 715 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 AUHQ13825 339 aaKnown RBP13.05□□□□□ -0.32
USP3-213ENST00000559711 PARP6Q2NL67 630 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 FAM182AQ5T1J6 154 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 PIK3R6Q5UE93 754 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 RWDD4Q6NW29 188 aaKnown RBP13.05□□□□□ -0.32
USP3-213ENST00000559711 KDM7AQ6ZMT4 941 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 C14orf80Q86SX3 495 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 CCDC13Q8IYE1 715 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 ATP6V0D2Q8N8Y2 350 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 EPS8L3Q8TE67 593 aaKnown RBP13.05□□□□□ -0.32
USP3-213ENST00000559711 PYROXD1Q8WU10 500 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 DPF3Q92784 378 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 BTN2A3PQ96KV6 586 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 WDR83Q9BRX9 315 aaKnown RBP13.05□□□□□ -0.32
USP3-213ENST00000559711 RXFP1Q9HBX9 757 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.05□□□□□ -0.32
USP3-213ENST00000559711 BCCIPQ9P287 314 aaKnown RBP eCLIP13.05□□□□□ -0.32
USP3-213ENST00000559711 SLC12A6Q9UHW9 1150 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 MAGED2Q9UNF1 606 aaPredicted RBP13.05□□□□□ -0.32
USP3-213ENST00000559711 NOVA2Q9UNW9 492 aaKnown RBP13.05□□□□□ -0.32
USP3-213ENST00000559711 PCDHB12Q9Y5F1 795 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 NR2E3Q9Y5X4 410 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 E7EVH7 732 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 RGS16O15492 202 aaPredicted RBP13.04□□□□□ -0.32
USP3-213ENST00000559711 TLR5O60602 858 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 MOCS2O96007 188 aaPredicted RBP13.04□□□□□ -0.32
USP3-213ENST00000559711 AGTP01019 485 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 APRTP07741 180 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 NR1D1P20393 614 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 MAGEA3P43357 314 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 ALDH1A3P47895 512 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 GPX6P59796 221 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 BBS9Q3SYG4 887 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 FAXCQ5TGI0 409 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 AFMIDQ63HM1 303 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 KLHDC10Q6PID8 442 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 TADA2BQ86TJ2 420 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 CAND1Q86VP6 1230 aaKnown RBP13.04□□□□□ -0.32
USP3-213ENST00000559711 ARHGAP12Q8IWW6 846 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 TCEAL8Q8IYN2 117 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 ZNF567Q8N184 647 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 BADQ92934 168 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 CLP1Q92989 425 aaKnown RBP13.04□□□□□ -0.32
USP3-213ENST00000559711 TRMT2BQ96GJ1 504 aaKnown RBP13.04□□□□□ -0.32
USP3-213ENST00000559711 TSGA13Q96PP4 275 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 CCSER2Q9H7U1 834 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 CYP4F11Q9HBI6 524 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 MRPL17Q9NRX2 175 aaKnown RBP13.04□□□□□ -0.32
USP3-213ENST00000559711 PCDH10Q9P2E7 1040 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 IGSF9Q9P2J2 1179 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 PPARGC1AQ9UBK2 798 aaKnown RBP13.04□□□□□ -0.32
USP3-213ENST00000559711 HBS1LQ9Y450 684 aaKnown RBP13.04□□□□□ -0.32
USP3-213ENST00000559711 YIPF1Q9Y548 306 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.04□□□□□ -0.32
USP3-213ENST00000559711 TEX264Q9Y6I9 313 aa13.04□□□□□ -0.32
USP3-213ENST00000559711 IGLV3-10A0A075B6K4 115 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 SLC12A8A0AV02 714 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 ZNF840PA6NDX5 716 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 ZBBXA8MT70 800 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 BANF1O75531 89 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 FGF18O76093 207 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 IVLP07476 585 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 PTPN3P26045 913 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 MAGOHP61326 146 aaKnown RBP13.03□□□□□ -0.32
USP3-213ENST00000559711 COG7P83436 770 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 CREMQ03060 361 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 FPGSQ05932 587 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 LONRF1Q17RB8 773 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 CCDC38Q502W7 563 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 MS4A13Q5J8X5 152 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 HP1BP3Q5SSJ5 553 aaPredicted RBP13.03□□□□□ -0.32
USP3-213ENST00000559711 TMEM240Q5SV17 173 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 NLRP14Q86W24 1093 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 MIB1Q86YT6 1006 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 LRRC49Q8IUZ0 686 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 ANKMY2Q8IV38 441 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 FIBCD1Q8N539 461 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 RTL3Q8N8U3 475 aaKnown RBP13.03□□□□□ -0.32
USP3-213ENST00000559711 ATP11CQ8NB49 1132 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 FBXO36Q8NEA4 188 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 ZSCAN18Q8TBC5 510 aaPredicted RBP13.03□□□□□ -0.32
USP3-213ENST00000559711 LRRC39Q96DD0 335 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 VAT1Q99536 393 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 STMN4Q9H169 189 aaPredicted RBP13.03□□□□□ -0.32
USP3-213ENST00000559711 ZBP1Q9H171 429 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 EIF2B3Q9NR50 452 aaKnown RBP13.03□□□□□ -0.32
USP3-213ENST00000559711 PRKAG2Q9UGJ0 569 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 LGALS13Q9UHV8 139 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 DNMT3LQ9UJW3 386 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 TRHDEQ9UKU6 1024 aa13.03□□□□□ -0.32
USP3-213ENST00000559711 INSL6Q9Y581 213 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms