RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ADGRG2Q8IZP9 1017 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 CFAP52Q8N1V2 620 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 FAM71BQ8TC56 605 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 OSCP1Q8WVF1 389 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 ZNF592Q92610 1267 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 IGSF8Q969P0 613 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 OTUB2Q96DC9 234 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 MYEOVQ96EZ4 313 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 ASIC4Q96FT7 647 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 RBM41Q96IZ5 413 aaKnown RBP9.92□□□□□ -0.82
CUX1-216ENST00000558469 ZFYVE19Q96K21 471 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 RPRD1AQ96P16 312 aaPredicted RBP9.92□□□□□ -0.82
CUX1-216ENST00000558469 EPAS1Q99814 870 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 TRMT61BQ9BVS5 477 aaKnown RBP9.92□□□□□ -0.82
CUX1-216ENST00000558469 CWC15Q9P013 229 aaKnown RBP9.92□□□□□ -0.82
CUX1-216ENST00000558469 STIM2Q9P246 746 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 NYNRINQ9P2P1 1898 aaKnown RBP9.91□□□□□ -0.82
CUX1-216ENST00000558469 H3BRJ5 948 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 ZNF500O60304 480 aaPredicted RBP9.91□□□□□ -0.82
CUX1-216ENST00000558469 TBL1XO60907 577 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 TUBB4AP04350 444 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 KRT10P13645 584 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 HOXB3P14651 431 aaPredicted RBP9.91□□□□□ -0.82
CUX1-216ENST00000558469 IL4RP24394 825 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 EPHB2P29323 1055 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 GDI1P31150 447 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 CETN2P41208 172 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 CDKN2BP42772 138 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 HCAR3P49019 387 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 IRAK1P51617 712 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 ZNF135P52742 658 aaPredicted RBP9.91□□□□□ -0.82
CUX1-216ENST00000558469 COPS2P61201 443 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 RPS24P62847 133 aaKnown RBP9.91□□□□□ -0.82
CUX1-216ENST00000558469 NRG1Q02297 640 aaPredicted RBP9.91□□□□□ -0.82
CUX1-216ENST00000558469 FCHO2Q0JRZ9 810 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 EML3Q32P44 896 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 MPPE1Q53F39 396 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 TFDP3Q5H9I0 405 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 ARTNQ5T4W7 220 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 MANEALQ5VSG8 457 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 KAZNQ674X7 775 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 SPOCD1Q6ZMY3 1216 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 RFX8Q6ZV50 586 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 ANKS1BQ7Z6G8 1248 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 CIR1Q86X95 450 aaPredicted RBP9.91□□□□□ -0.82
CUX1-216ENST00000558469 TMEM25Q86YD3 366 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 ZNF683Q8IZ20 524 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 CPXM2Q8N436 756 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 KIAA1958Q8N8K9 716 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 DDI1Q8WTU0 396 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 DEPDC1BQ8WUY9 529 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 TSC1Q92574 1164 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 IRF7Q92985 503 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 ATP2A3Q93084 1043 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 BHMTQ93088 406 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 TBC1D31Q96DN5 1066 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 TMA16Q96EY4 203 aaKnown RBP9.91□□□□□ -0.82
CUX1-216ENST00000558469 PRICKLE1Q96MT3 831 aaPredicted RBP9.91□□□□□ -0.82
CUX1-216ENST00000558469 CSPG4P5Q96PW8 444 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 OSBPL9Q96SU4 736 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 MAK16Q9BXY0 300 aaKnown RBP9.91□□□□□ -0.82
CUX1-216ENST00000558469 ZYG11BQ9C0D3 744 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 EBF3Q9H4W6 596 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 KCNK12Q9HB15 430 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 SPHK2Q9NRA0 654 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 PLK2Q9NYY3 685 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 MPP6Q9NZW5 540 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 PPARGC1AQ9UBK2 798 aaKnown RBP9.91□□□□□ -0.82
CUX1-216ENST00000558469 SNX12Q9UMY4 172 aa9.91□□□□□ -0.82
CUX1-216ENST00000558469 COL4A2P08572 1712 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 UNC80Q8N2C7 3258 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 COL4A3Q01955 1670 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 IGLV3-10A0A075B6K4 115 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 hCG_1818297A0A087WSY0 165 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 TYW5A2RUC4 315 aaKnown RBP9.9□□□□□ -0.82
CUX1-216ENST00000558469 DRGXA6NNA5 263 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 LOC730098B7Z3J9 87 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 NEDD8-MDP1E9PL57 170 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 GFRA2O00451 464 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 CHADO15335 359 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 CEP104O60308 925 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 CNTN5O94779 1100 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 CYBBP04839 570 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 ASGR2P07307 311 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 ARSAP15289 507 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 AMPD1P23109 780 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 HTR7P34969 479 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 TNK2Q07912 1038 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 DPYSQ14117 519 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 PDGFRLQ15198 375 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 ANO4Q32M45 955 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 C5orf22Q49AR2 442 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 ALFQ53S48 1182 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 LY6G5CQ5SRR4 150 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 SEL1L2Q5TEA6 688 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 PAPD7Q5XG87 772 aaKnown RBP9.9□□□□□ -0.82
CUX1-216ENST00000558469 RHBDF2Q6PJF5 856 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 VSIG1Q86XK7 387 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 RFX6Q8HWS3 928 aa9.9□□□□□ -0.82
CUX1-216ENST00000558469 ADHFE1Q8IWW8 467 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms