RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 MARCH5Q9NX47 278 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 HSFX1Q9UBD0 423 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 STK39Q9UEW8 545 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 OR12D3Q9UGF7 316 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 ZMYND8Q9ULU4 1186 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-229ENST00000557348 CLUHO75153 1309 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 SMIM23A6NLE4 172 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 ERI2A8K979 691 aaKnown RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 F8W810 466 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 AP3B1O00203 1094 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 MFSD11O43934 449 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 SNX3O60493 162 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 HNRNPCL1O60812 293 aaKnown RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 TMEM63AO94886 807 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 OAS1P00973 400 aaKnown RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 GALTP07902 379 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 VIMP08670 466 aaKnown RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 NEFHP12036 1026 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 ERCC2P18074 760 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 PAX7P23759 505 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 STX2P32856 288 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 SH3BGRP55822 239 aaPredicted RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 MRPS35P82673 323 aaKnown RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 FAAP100Q0VG06 881 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 SLC10A2Q12908 348 aaPredicted RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 BNIP1Q12981 228 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 LBRQ14739 615 aaKnown RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 PDCD2Q16342 344 aaPredicted RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 KCTD19Q17RG1 926 aaPredicted RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 ANKRD22Q5VYY1 191 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 DENND5BQ6ZUT9 1274 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 CCNJLQ8IV13 435 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 ZFAND2BQ8WV99 257 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 HDAC11Q96DB2 347 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 TBC1D31Q96DN5 1066 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 TLR8Q9NR97 1041 aaKnown RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 PSMC3IPQ9P2W1 217 aaPredicted RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 TRHDEQ9UKU6 1024 aa13□□□□□ -0.33
SHMT2-229ENST00000557348 USP15Q9Y4E8 981 aaPredicted RBP13□□□□□ -0.33
SHMT2-229ENST00000557348 ABHD14A-ACY1A0A1B0GW23 586 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 TBC1D4O60343 1298 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 LMNAP02545 664 aaKnown RBP12.99□□□□□ -0.33
SHMT2-229ENST00000557348 YWHAQP27348 245 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 HOXC13P31276 330 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 SLCO1A2P46721 670 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 KPNA1P52294 538 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-229ENST00000557348 GEMIN4P57678 1058 aaKnown RBP12.99□□□□□ -0.33
SHMT2-229ENST00000557348 TLE2Q04725 743 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 E2F5Q15329 346 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 USP41Q3LFD5 358 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 BBS9Q3SYG4 887 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 ANKRD20A2Q5SQ80 823 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 ANKRD20A1Q5TYW2 823 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 ANKRD20A3Q5VUR7 823 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 ITPRIPL1Q6GPH6 555 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 MFN1Q8IWA4 741 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 FBXO36Q8NEA4 188 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 SCAMP5Q8TAC9 235 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 UHMK1Q8TAS1 419 aaKnown RBP12.99□□□□□ -0.33
SHMT2-229ENST00000557348 ARHGEF2Q92974 986 aaKnown RBP12.99□□□□□ -0.33
SHMT2-229ENST00000557348 SPDL1Q96EA4 605 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 CYTH2Q99418 400 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 NAT9Q9BTE0 207 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 ACSS3Q9H6R3 686 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 C10orf88Q9H8K7 445 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 IGSF9Q9P2J2 1179 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 TBX21Q9UL17 535 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 TLR6Q9Y2C9 796 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 ARL2BPQ9Y2Y0 163 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 BACE2Q9Y5Z0 518 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.99□□□□□ -0.33
SHMT2-229ENST00000557348 PTPRDP23468 1912 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 A6NHS1 94 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 GOLGA8MH3BSY2 632 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 TRDMT1O14717 391 aaKnown RBP12.99□□□□□ -0.33
SHMT2-229ENST00000557348 APRTP07741 180 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 OR4Q2P0C623 313 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 CHN1P15882 459 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 EPHB2P29323 1055 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 ATN1P54259 1190 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-229ENST00000557348 PPIDQ08752 370 aaKnown RBP12.99□□□□□ -0.33
SHMT2-229ENST00000557348 AP1B1Q10567 949 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 PKN2Q16513 984 aaKnown RBP12.99□□□□□ -0.33
SHMT2-229ENST00000557348 TRIM60Q495X7 471 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 RNF43Q68DV7 783 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 LMNTD2Q8IXW0 634 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 ZNF276Q8N554 614 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 CCNYQ8ND76 341 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 CCDC110Q8TBZ0 833 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 ADAM32Q8TC27 787 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 OVCA2Q8WZ82 227 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 P2RY11Q96G91 374 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 SCLYQ96I15 445 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 C1orf74Q96LT6 269 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 PWWP2AQ96N64 755 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 TMEM237Q96Q45 408 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 GPR62Q9BZJ7 368 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 ETNK1Q9HBU6 452 aa12.99□□□□□ -0.33
SHMT2-229ENST00000557348 RXFP1Q9HBX9 757 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms