RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	CCR3	P51677	355 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	CBX3	Q13185	183 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	POU6F1	Q14863	301 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	CYP51A1	Q16850	503 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	SLC9B1	Q4ZJI4	515 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	PPM1L	Q5SGD2	360 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	TLDC1	Q6P9B6	456 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	SAPCD2	Q86UD0	394 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	PDSS2	Q86YH6	399 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	MPP5	Q8N3R9	675 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	HELQ	Q8TDG4	1101 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	SYTL5	Q8TDW5	730 aa	Predicted RBP	5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	TUBGCP3	Q96CW5	907 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	PTCD3	Q96EY7	689 aa	Known RBP	5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	PRR11	Q96HE9	360 aa	Predicted RBP	5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	ACSS3	Q9H6R3	686 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	LRRC40	Q9H9A6	602 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	CASS4	Q9NQ75	786 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	C6orf203	Q9P0P8	240 aa	Predicted RBP	5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	TEKT2	Q9UIF3	430 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	RAB26	Q9ULW5	256 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	BCL9L	Q86UU0	1499 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005		H0Y626	953 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	MRAS	O14807	208 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	PMPCB	O75439	489 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	TIPRL	O75663	272 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	TRIM16	O95361	564 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	PIGN	O95427	931 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	IRF1	P10914	325 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	GRIA3	P42263	894 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	CSE1L	P55060	971 aa	Known RBP	5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	NFIL3	Q16649	462 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	OTUD3	Q5T2D3	398 aa	Predicted RBP	5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	ANGEL2	Q5VTE6	544 aa	Known RBP	5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	TMC7	Q7Z402	723 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	FAM131B	Q86XD5	332 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	TMEM161B	Q8NDZ6	487 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	ADAM32	Q8TC27	787 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	MFSD14A	Q96MC6	490 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	APOL5	Q9BWW9	433 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	OSBPL6	Q9BZF3	934 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	NRDE2	Q9H7Z3	1164 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	CDHR5	Q9HBB8	845 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	NMRAL1	Q9HBL8	299 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	SNX15	Q9NRS6	342 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	FAM8A1	Q9UBU6	413 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	CAB39	Q9Y376	341 aa	Predicted RBP	5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005		A0A087X1B8	175 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	TRIM38	O00635	465 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	ASNA1	O43681	348 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	BNIP3L	O60238	219 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	ITGAX	P20702	1163 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	CRHR1	P34998	444 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	HOXD13	P35453	343 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	SQLE	Q14534	574 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	SPOUT1	Q5T280	376 aa	Known RBP	5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	TMEM63B	Q5T3F8	832 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	BTBD8	Q5XKL5	378 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	THEM5	Q8N1Q8	247 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	KCTD4	Q8WVF5	259 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	SLC44A1	Q8WWI5	657 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	MTFMT	Q96DP5	389 aa	Known RBP	5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	ZDHHC15	Q96MV8	337 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	MORF4L1	Q9UBU8	362 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	FAM198A	Q9UFP1	575 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	ITGA11	Q9UKX5	1188 aa		5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	GNE	Q9Y223	722 aa	Known RBP	5.09	□□□□□ -1.59
SYNE2-223	ENST00000557005	DYTN	A2CJ06	578 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	CCDC154	A6NI56	674 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	HS6ST1	O60243	411 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	WDR47	O94967	919 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF286B	P0CG31	522 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	VCL	P18206	1134 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	FAS	P25445	335 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	GSS	P48637	474 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	GPX6	P59796	221 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	LSM3	P62310	102 aa	Known RBP	5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	IL5RA	Q01344	420 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	PTPN11	Q06124	597 aa	Predicted RBP	5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	TTLL4	Q14679	1199 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	KYAT1	Q16773	422 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF618	Q5T7W0	954 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	AGAP9	Q5VTM2	703 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	XYLT1	Q86Y38	959 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	OR8H2	Q8N162	312 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	GALNT15	Q8N3T1	639 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	MAGEE2	Q8TD90	523 aa	Predicted RBP	5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	RMDN1	Q96DB5	314 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	KCTD15	Q96SI1	283 aa	Predicted RBP	5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	CNPY3	Q9BT09	278 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	FRMD8	Q9BZ67	464 aa	Predicted RBP	5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	REXO4	Q9GZR2	422 aa	Known RBP	5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	SCN3B	Q9NY72	215 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	CNOT6	Q9ULM6	557 aa	Known RBP	5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	CLUH	O75153	1309 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	LAMB1	P07942	1786 aa		5.09	□□□□□ -1.6
SYNE2-223	ENST00000557005	MYOCOS	A0A1B0GUC4	107 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SIGLEC16	A6NMB1	481 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TNPO2	O14787	897 aa	Known RBP	5.08	□□□□□ -1.6

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