RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TTC33Q6PID6 262 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-226ENST00000556825 TPH2Q8IWU9 490 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 PIAS4Q8N2W9 510 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-226ENST00000556825 MRRFQ96E11 262 aaKnown RBP14.14□□□□□ -0.15
SHMT2-226ENST00000556825 MYD88Q99836 296 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 CHID1Q9BWS9 393 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 HEMGNQ9BXL5 484 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 ADAM33Q9BZ11 813 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 THAP2Q9H0W7 228 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 COQ10BQ9H8M1 238 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 EPB41L4AQ9HCS5 686 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-226ENST00000556825 ACP6Q9NPH0 428 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 IP6K2Q9UHH9 426 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 DNMT3LQ9UJW3 386 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 ZNF221Q9UK13 617 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 ANKRD62A6NC57 917 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 LPXNO60711 386 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 RNGTTO60942 597 aaKnown RBP14.14□□□□□ -0.15
SHMT2-226ENST00000556825 OR5F1O95221 314 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 PCCAP05165 728 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-226ENST00000556825 PGK2P07205 417 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 IL2RBP14784 551 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 MRPS15P82914 257 aaKnown RBP14.14□□□□□ -0.15
SHMT2-226ENST00000556825 CLCQ05315 142 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 GALNT3Q14435 633 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 SQLEQ14534 574 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 EFHC2Q5JST6 749 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 LRP10Q7Z4F1 713 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 GLYCTKQ8IVS8 523 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 LINC00518Q8N0U6 118 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 FAM47BQ8NA70 645 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 AK8Q96MA6 479 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 MCMBPQ9BTE3 642 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 FETUBQ9UGM5 382 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 KIF13BQ9NQT8 1826 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 YKT6O15498 198 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 S100A6P06703 90 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 ASNSP08243 561 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 SNRPA1P09661 255 aaKnown RBP14.13□□□□□ -0.15
SHMT2-226ENST00000556825 COMTP21964 271 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 RPL10P27635 214 aaKnown RBP14.13□□□□□ -0.15
SHMT2-226ENST00000556825 IL15P40933 162 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-226ENST00000556825 ZNF33BQ06732 778 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 KCNT1Q5JUK3 1230 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 CATSPER3Q86XQ3 398 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 LACC1Q8IV20 430 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 CCDC60Q8IWA6 550 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-226ENST00000556825 ZNF786Q8N393 782 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 SNX31Q8N9S9 440 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 FNIP1Q8TF40 1166 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 MZB1Q8WU39 189 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 PIK3R3Q92569 461 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 DLG3Q92796 817 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 NXPE3Q969Y0 559 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 CMTM5Q96DZ9 223 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 SECISBP2Q96T21 854 aaKnown RBP14.13□□□□□ -0.15
SHMT2-226ENST00000556825 RHOBTB2Q9BYZ6 727 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 VPS33BQ9H267 617 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 ADPRHL2Q9NX46 363 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 CPSF3Q9UKF6 684 aaKnown RBP14.13□□□□□ -0.15
SHMT2-226ENST00000556825 HCN4Q9Y3Q4 1203 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 PRKAB2O43741 272 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 SSTR3P32745 418 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-226ENST00000556825 PPP2R5DQ14738 602 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 TCEAL1Q15170 157 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 LRRC41Q15345 812 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 PFKFB3Q16875 520 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-226ENST00000556825 CCDC142Q17RM4 750 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 TRAF7Q6Q0C0 670 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 CORO6Q6QEF8 472 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 SV2BQ7L1I2 683 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 COLGALT2Q8IYK4 626 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 PARP8Q8N3A8 854 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 RAB2BQ8WUD1 216 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 CD101Q93033 1021 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 USB1Q9BQ65 265 aaKnown RBP14.13□□□□□ -0.15
SHMT2-226ENST00000556825 CHST12Q9NRB3 414 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 SERPINB13Q9UIV8 391 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 WBP11Q9Y2W2 641 aaKnown RBP14.13□□□□□ -0.15
SHMT2-226ENST00000556825 RIPK3Q9Y572 518 aa14.13□□□□□ -0.15
SHMT2-226ENST00000556825 POTEB3A0JP26 581 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 MAGEB16A2A368 324 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 PI15O43692 258 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 OR7A10O76100 309 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 KCNH1O95259 989 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 OLFM2O95897 454 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 PTPN1P18031 435 aaKnown RBP14.12□□□□□ -0.15
SHMT2-226ENST00000556825 PIK3R1P27986 724 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 TRAP1Q12931 704 aaKnown RBP14.12□□□□□ -0.15
SHMT2-226ENST00000556825 ADGRD1Q6QNK2 874 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 POTEBQ6S5H4 581 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 MFSD6Q6ZSS7 791 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 C15orf52Q6ZUT6 534 aaKnown RBP14.12□□□□□ -0.15
SHMT2-226ENST00000556825 CDR2LQ86X02 465 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-226ENST00000556825 SNX32Q86XE0 403 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 AADATQ8N5Z0 425 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 OR13F1Q8NGS4 319 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 HEXIM2Q96MH2 286 aaKnown RBP14.12□□□□□ -0.15
SHMT2-226ENST00000556825 FAM111AQ96PZ2 611 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 IL12RB2Q99665 862 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms