RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 CAPN3P20807 821 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 HTR7P34969 479 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 THBS4P35443 961 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 PBX1P40424 430 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 TUBP50607 506 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 SUMO2P61956 95 aaKnown RBP4.81□□□□□ -1.64
PRPF39-210ENST00000556718 PLAC9Q5JTB6 97 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 ZNF618Q5T7W0 954 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 DENND2CQ68D51 928 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 ANKRD40Q6AI12 368 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 TTLL5Q6EMB2 1281 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 RASGRP2Q7LDG7 609 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 TBC1D1Q86TI0 1168 aaPredicted RBP4.81□□□□□ -1.64
PRPF39-210ENST00000556718 SLC22A17Q8WUG5 538 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 ST8SIA4Q92187 359 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 PIGSQ96S52 555 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 REEP2Q9BRK0 252 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 PAAF1Q9BRP4 392 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 TBC1D22BQ9NU19 505 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 CCNL1Q9UK58 526 aaPredicted RBP4.81□□□□□ -1.64
PRPF39-210ENST00000556718 DNAJC16Q9Y2G8 782 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 ZBTB1Q9Y2K1 713 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 RABGAP1Q9Y3P9 1069 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 AFG3L2Q9Y4W6 797 aa4.81□□□□□ -1.64
PRPF39-210ENST00000556718 TBC1D3DA0A087WVF3 549 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 TBC1D3IA0A087WXS9 549 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 TBC1D3EA0A087X179 549 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 TBC1D3KA0A087X1G2 549 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 SMIM35A0A1B0GVV1 85 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 ANKRD18BA2A2Z9 1011 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 DYTNA2CJ06 578 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 TBC1D3BA6NDS4 549 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 TBC1D3FA6NER0 549 aaPredicted RBP4.8□□□□□ -1.64
PRPF39-210ENST00000556718 SLC38A8A6NNN8 435 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 TBC1D3LB9A6J9 549 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 F5H0A9 414 aaPredicted RBP4.8□□□□□ -1.64
PRPF39-210ENST00000556718 STX16-NPEPL1H3BU86 382 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 STX16O14662 325 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 KLK10O43240 276 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 CBFA2T3O75081 653 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 GUCY1B2O75343 617 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 NXPH3O95157 252 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 DLDP09622 509 aaKnown RBP4.8□□□□□ -1.64
PRPF39-210ENST00000556718 HNRNPA1P09651 372 aaKnown RBP eCLIP4.8□□□□□ -1.64
PRPF39-210ENST00000556718 TBC1D3HP0C7X1 549 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 CBSLP0DN79 551 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 CREB1P16220 341 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 NDUFB7P17568 137 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 TKTP29401 623 aaKnown RBP4.8□□□□□ -1.64
PRPF39-210ENST00000556718 CBSP35520 551 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 PSMC2P35998 433 aaKnown RBP4.8□□□□□ -1.64
PRPF39-210ENST00000556718 PGM1P36871 562 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 ARHGAP25P42331 645 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 PCP4P48539 62 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 NR1H2P55055 460 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 RBM6P78332 1123 aaKnown RBP4.8□□□□□ -1.64
PRPF39-210ENST00000556718 PDCLQ13371 301 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 RABEP1Q15276 862 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 LY6KQ17RY6 165 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 TBC1D3GQ6DHY5 549 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 TBC1D3CQ6IPX1 549 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 SYNE3Q6ZMZ3 975 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 TBC1D3Q8IZP1 549 aaPredicted RBP4.8□□□□□ -1.64
PRPF39-210ENST00000556718 CCDC89Q8N998 374 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 NOC3LQ8WTT2 800 aaKnown RBP4.8□□□□□ -1.64
PRPF39-210ENST00000556718 XAGE5Q8WWM1 108 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 SOCS4Q8WXH5 440 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 RFFLQ8WZ73 363 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 ZUFSPQ96AP4 578 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 R3HDM4Q96D70 268 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 KTI12Q96EK9 354 aaPredicted RBP4.8□□□□□ -1.64
PRPF39-210ENST00000556718 TIGD1Q96MW7 591 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 C7orf26Q96N11 449 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 PAIP1Q9H074 479 aaKnown RBP4.8□□□□□ -1.64
PRPF39-210ENST00000556718 PDCL3Q9H2J4 239 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 ABHD16BQ9H3Z7 469 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 AASSQ9UDR5 926 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 SH2B3Q9UQQ2 575 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 LRP12Q9Y561 859 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 PCDHB7Q9Y5E2 793 aa4.8□□□□□ -1.64
PRPF39-210ENST00000556718 GXYLT2A0PJZ3 443 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 VWA3AA6NCI4 1184 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 MBD3L5A6NJ08 208 aaPredicted RBP4.79□□□□□ -1.64
PRPF39-210ENST00000556718 H0YIZ8 118 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 RTN3O95197 1032 aaPredicted RBP4.79□□□□□ -1.64
PRPF39-210ENST00000556718 ADRA1DP25100 572 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 MMP13P45452 471 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 POLGP54098 1239 aaPredicted RBP4.79□□□□□ -1.64
PRPF39-210ENST00000556718 PDE1AP54750 535 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 CASP6P55212 293 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 TPTEP56180 551 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 GOLGA8FQ08AF8 430 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 FHL3Q13643 280 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 KCNJ12Q14500 433 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 GPR68Q15743 365 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 TREML2Q5T2D2 321 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 CCDC30Q5VVM6 783 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 ITPRIPL1Q6GPH6 555 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 ANO7Q6IWH7 933 aa4.79□□□□□ -1.64
PRPF39-210ENST00000556718 ACAD10Q6JQN1 1059 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms