RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 MRPS27Q92552 414 aaKnown RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 NAF1Q96HR8 494 aaKnown RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 CCDC43Q96MW1 224 aaKnown RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 ZNF558Q96NG5 402 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 RIT2Q99578 217 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 CDCA3Q99618 268 aaPredicted RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 JPH2Q9BR39 696 aaPredicted RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 SLC46A2Q9BY10 475 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 PITHD1Q9GZP4 211 aaPredicted RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 HAPLN2Q9GZV7 340 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 ZMYND12Q9H0C1 365 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 TMEM117Q9H0C3 514 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 TMX1Q9H3N1 280 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 ZNF768Q9H5H4 540 aaKnown RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 WDR26Q9H7D7 661 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 RSAD1Q9HA92 442 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 SH3GLB2Q9NR46 395 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 TMEM161AQ9NX61 479 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 DACT1Q9NYF0 836 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 ANKFY1Q9P2R3 1169 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 SUCLA2Q9P2R7 463 aaPredicted RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 MUTYHQ9UIF7 546 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 BARX2Q9UMQ3 279 aaPredicted RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 HS3ST4Q9Y661 456 aa4.31□□□□□ -1.72
ATXN3-240ENST00000556339 RIF1Q5UIP0 2472 aaKnown RBP4.31□□□□□ -1.72
ATXN3-240ENST00000556339 FNDC1Q4ZHG4 1894 aaPredicted RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 TECTAO75443 2155 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 COL4A4P53420 1690 aaPredicted RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 A0A087WZ62 844 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 IGKV6D-21A0A0A0MT36 114 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 ESYT2A0FGR8 921 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 TMEM221A6NGB7 291 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 NT5C1B-RDH14C9J2C7 533 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 M0R296 226 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 RNASET2O00584 256 aaKnown RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 GPR32O75388 356 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 CSDE1O75534 798 aaKnown RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 CDKL5O76039 1030 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 KIF20AO95235 890 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 DEXIO95424 95 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 C22orf31O95567 290 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 ALDH2P05091 517 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 JMJD7P0C870 316 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 IFNAR1P17181 557 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 XPAP23025 273 aaPredicted RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 SFPQP23246 707 aaKnown RBP eCLIP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 SP100P23497 879 aaPredicted RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 CIITAP33076 1130 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 PPM1AP35813 382 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 ZNF75DP51815 510 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 WNT3AP56704 352 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 FAM189BP81408 668 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 PRKCEQ02156 737 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 DUSP2Q05923 314 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 ST3GAL1Q11201 340 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 ZNF460Q14592 562 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 SMC1AQ14683 1233 aaKnown RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 NONOQ15233 471 aaKnown RBP eCLIP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 DUSP6Q16828 381 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 LETM2Q2VYF4 491 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 XKR3Q5GH77 459 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 CT47A1Q5JQC4 288 aaPredicted RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 ATAT1Q5SQI0 421 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 TAF3Q5VWG9 929 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 ADALQ6DHV7 355 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 TWF2Q6IBS0 349 aaKnown RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 ESRP1Q6NXG1 681 aaKnown RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 Q6YL49 198 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 OTUD6AQ7L8S5 288 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 CATSPER4Q7RTX7 472 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 RD3Q7Z3Z2 195 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 GDF7Q7Z4P5 450 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 PRIMA1Q86XR5 153 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 RHPN2Q8IUC4 686 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 UNC5BQ8IZJ1 945 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 BLIDQ8IZY5 108 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 URGCPQ8TCY9 931 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 KCNG4Q8TDN1 519 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 ANKRD7Q92527 254 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 CASP10Q92851 521 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 GJA10Q969M2 543 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 MYEOVQ96EZ4 313 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 CEP170P1Q96L14 293 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 TIGD1Q96MW7 591 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 CASD1Q96PB1 797 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 DCLRE1CQ96SD1 692 aaKnown RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 ELF4Q99607 663 aaPredicted RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 SH2D3AQ9BRG2 576 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 FDXACB1Q9BRP7 624 aaPredicted RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 NDC1Q9BTX1 674 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 PHF7Q9BWX1 381 aaPredicted RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 RNF26Q9BY78 433 aaPredicted RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 TRIM5Q9C035 493 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 UNC45AQ9H3U1 944 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 SERHL2Q9H4I8 314 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 CWH43Q9H720 699 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 ELAC1Q9H777 363 aaKnown RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 CHST12Q9NRB3 414 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 CGNQ9P2M7 1197 aaKnown RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 B4GALT6Q9UBX8 382 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms