RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 FLT3P36888 993 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 ARHGAP8P85298 464 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 FANCCQ00597 558 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 C1QBPQ07021 282 aaKnown RBP21.32■■□□□ 1
CCDC88C-210ENST00000555995 NR1I3Q14994 352 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 ASIC2Q16515 512 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 TMEM215Q68D42 235 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 LPCAT2Q7L5N7 544 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 METTL3Q86U44 580 aaKnown RBP21.32■■□□□ 1
CCDC88C-210ENST00000555995 ADIPOR2Q86V24 386 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 C3orf20Q8ND61 904 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 BAP1Q92560 729 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 TBCBQ99426 244 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 SELENOOQ9BVL4 669 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 TKTL2Q9H0I9 626 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 CD248Q9HCU0 757 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 CALCOCO1Q9P1Z2 691 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 ZNF292O60281 2723 aa21.32■■□□□ 1
CCDC88C-210ENST00000555995 LRRC53A6NM62 1247 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 PAGE1O75459 146 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 NDUFV2P19404 249 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 UBASH3AP57075 661 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 LMAN2Q12907 356 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 CSRP2Q16527 193 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 FUT11Q495W5 492 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 C2CD6Q53TS8 623 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 SFMBT2Q5VUG0 894 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 OTUD1Q5VV17 481 aaPredicted RBP21.31■■□□□ 1
CCDC88C-210ENST00000555995 KIAA1211LQ6NV74 962 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 LRRC31Q6UY01 552 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 CFAP52Q8N1V2 620 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 SLC30A5Q8TAD4 765 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 WFDC5Q8TCV5 224 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 TTC17Q96AE7 1141 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 NAP1L5Q96NT1 182 aaPredicted RBP21.31■■□□□ 1
CCDC88C-210ENST00000555995 SUN2Q9UH99 717 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 RAD54BQ9Y620 910 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 HS3ST4Q9Y661 456 aa21.31■■□□□ 1
CCDC88C-210ENST00000555995 WASH3PC4AMC7 463 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 AP5Z1O43299 807 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 CLDN11O75508 207 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 KRT3P12035 628 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 TNFAIP3P21580 790 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 PTPN9P43378 593 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 SULT2A1Q06520 285 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 SPEM2Q0P670 501 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 AUHQ13825 339 aaKnown RBP21.3■■□□□ 1
CCDC88C-210ENST00000555995 MAP7D1Q3KQU3 841 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 ARL13BQ3SXY8 428 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 RNF219Q5W0B1 726 aaPredicted RBP21.3■■□□□ 1
CCDC88C-210ENST00000555995 FBXL22Q6P050 247 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 CCAR2Q8N163 923 aaKnown RBP21.3■■□□□ 1
CCDC88C-210ENST00000555995 SORCS1Q8WY21 1168 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 VCPIP1Q96JH7 1222 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 LMLNQ96KR4 655 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 MRGPRX1Q96LB2 322 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 CFAP57Q96MR6 1250 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 PCDHB18PQ96TA0 734 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 TMEM245Q9H330 911 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 PRDM16Q9HAZ2 1276 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 SEMA4GQ9NTN9 838 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 AIPL1Q9NZN9 384 aa21.3■■□□□ 1
CCDC88C-210ENST00000555995 A0A1W2PQJ5 194 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 DCLK1O15075 740 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 SRPRAP08240 638 aaKnown RBP21.29■■□□□ 1
CCDC88C-210ENST00000555995 PDGFRAP16234 1089 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 PRKCIP41743 596 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 CDH4P55283 916 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 PTP4A2Q12974 167 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 CAMK2GQ13555 558 aaPredicted RBP21.29■■□□□ 1
CCDC88C-210ENST00000555995 PLEKHG6Q3KR16 790 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 C5orf22Q49AR2 442 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 PITRM1Q5JRX3 1037 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 DNAJC24Q6P3W2 148 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 KIAA1324Q6UXG2 1013 aaKnown RBP21.29■■□□□ 1
CCDC88C-210ENST00000555995 MON1BQ7L1V2 547 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 STRADAQ7RTN6 431 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 BNIPLQ7Z465 357 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 IRF2BP2Q7Z5L9 587 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 PRCCQ92733 491 aaPredicted RBP21.29■■□□□ 1
CCDC88C-210ENST00000555995 MYEOVQ96EZ4 313 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 C1orf74Q96LT6 269 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 HAPLN3Q96S86 360 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 TTYH3Q9C0H2 523 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 VPS45Q9NRW7 570 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 VANGL2Q9ULK5 521 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 NUP205Q92621 2012 aa21.29■■□□□ 1
CCDC88C-210ENST00000555995 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.28■■□□□ 1
CCDC88C-210ENST00000555995 C2CD4BA6NLJ0 364 aa21.28■■□□□ 1
CCDC88C-210ENST00000555995 ENDOD1O94919 500 aa21.28■■□□□ 1
CCDC88C-210ENST00000555995 ADCY5O95622 1261 aa21.28■■□□□ 1
CCDC88C-210ENST00000555995 ACADMP11310 421 aa21.28■■□□□ 1
CCDC88C-210ENST00000555995 PRKCHP24723 683 aa21.28■■□□□ 1
CCDC88C-210ENST00000555995 MPLP40238 635 aa21.28■■□□□ 1
CCDC88C-210ENST00000555995 NNMTP40261 264 aa21.28■■□□□ 1
CCDC88C-210ENST00000555995 CSKP41240 450 aa21.28■■□□□ 1
CCDC88C-210ENST00000555995 ZNF177Q13360 481 aaPredicted RBP21.28■■□□□ 1
CCDC88C-210ENST00000555995 ACAD10Q6JQN1 1059 aa21.28■■□□□ 1
CCDC88C-210ENST00000555995 CYP2U1Q7Z449 544 aa21.28■■□□□ 1
CCDC88C-210ENST00000555995 C12orf50Q8NA57 414 aaPredicted RBP21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms