RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 LPIN3Q9BQK8 851 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 SLC46A2Q9BY10 475 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 FOXP3Q9BZS1 431 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 DPH5Q9H2P9 285 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 LRRC19Q9H756 370 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 FSCN3Q9NQT6 498 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 PARVAQ9NVD7 372 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 EBF1Q9UH73 591 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 FAM153AQ9UHL3 310 aa11.57□□□□□ -0.56
SHMT2-216ENST00000554975 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-216ENST00000554975 CYSRT1A8MQ03 144 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 ATMINO43313 823 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-216ENST00000554975 MED7O43513 233 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 OAZ2O95190 189 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 P4HA1P13674 534 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 WEE1P30291 646 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 POLR2BP30876 1174 aaKnown RBP11.56□□□□□ -0.56
SHMT2-216ENST00000554975 COILP38432 576 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-216ENST00000554975 MAPK8P45983 427 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 ZNF132P52740 706 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 HNRNPH2P55795 449 aaKnown RBP11.56□□□□□ -0.56
SHMT2-216ENST00000554975 MRPS25P82663 173 aaKnown RBP11.56□□□□□ -0.56
SHMT2-216ENST00000554975 DHX9Q08211 1270 aaKnown RBP11.56□□□□□ -0.56
SHMT2-216ENST00000554975 ZNF211Q13398 564 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-216ENST00000554975 PPP1R7Q15435 360 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 ZBTB6Q15916 424 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 DUOXA2Q1HG44 320 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 SGSM1Q2NKQ1 1148 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 KRT71Q3SY84 523 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 SGO2Q562F6 1265 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 NAA35Q5VZE5 725 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 DNAAF5Q86Y56 855 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 KATNAL2Q8IYT4 538 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 PRELID2Q8N945 189 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 TMEM35BQ8NCS4 154 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 KRT35Q92764 455 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 TATDN2Q93075 761 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 TRIM51Q9BSJ1 452 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 ASB7Q9H672 318 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 TASP1Q9H6P5 420 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 TMEM74BQ9NUR3 256 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 ADAM22Q9P0K1 906 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 WHRNQ9P202 907 aa11.56□□□□□ -0.56
SHMT2-216ENST00000554975 FAM221BA6H8Z2 402 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 M0QZQ0 153 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 EBAG9O00559 213 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 PPEF2O14830 753 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 KRT14P02533 472 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 ATF6P18850 670 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 ACO1P21399 889 aaKnown RBP11.55□□□□□ -0.56
SHMT2-216ENST00000554975 DRD1P21728 446 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 LRPAP1P30533 357 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 GJA4P35212 333 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 ALDH1A3P47895 512 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 DHPSP49366 369 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-216ENST00000554975 COPS2P61201 443 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 TFAMQ00059 246 aaKnown RBP11.55□□□□□ -0.56
SHMT2-216ENST00000554975 YWHAHQ04917 246 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-216ENST00000554975 SCAPQ12770 1279 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 GPR17Q13304 367 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 PLD1Q13393 1074 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 PTK6Q13882 451 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 ZNF699Q32M78 642 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 ARHGAP15Q53QZ3 475 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 TRIM61Q5EBN2 209 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 DNAJC21Q5F1R6 531 aaKnown RBP11.55□□□□□ -0.56
SHMT2-216ENST00000554975 LRRC38Q5VT99 294 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 C9orf57Q5W0N0 161 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 PLEKHA7Q6IQ23 1121 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 TMEM270Q6UE05 265 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 CRELD2Q6UXH1 353 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-216ENST00000554975 TRMT10CQ7L0Y3 403 aaKnown RBP11.55□□□□□ -0.56
SHMT2-216ENST00000554975 ARMCX6Q7L4S7 300 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 TMEM150AQ86TG1 271 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 NT5DC4Q86YG4 428 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 UBR7Q8N806 425 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 FRMD1Q8N878 549 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 EXD1Q8NHP7 514 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 ZNF516Q92618 1163 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 USP13Q92995 863 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-216ENST00000554975 P2RY13Q9BPV8 354 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 PI4K2AQ9BTU6 479 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 TMEM109Q9BVC6 243 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 TXLNGYQ9BZA5 131 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 MIS12Q9H081 205 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 PABPC3Q9H361 631 aaKnown RBP11.55□□□□□ -0.56
SHMT2-216ENST00000554975 ZDHHC18Q9NUE0 388 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 THG1LQ9NWX6 298 aaKnown RBP11.55□□□□□ -0.56
SHMT2-216ENST00000554975 DPP3Q9NY33 737 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 DDX56Q9NY93 547 aaKnown RBP11.55□□□□□ -0.56
SHMT2-216ENST00000554975 WDR35Q9P2L0 1181 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 EVLQ9UI08 416 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-216ENST00000554975 DERAQ9Y315 318 aa11.55□□□□□ -0.56
SHMT2-216ENST00000554975 VNN1O95497 513 aa11.54□□□□□ -0.56
SHMT2-216ENST00000554975 HNRNPLP14866 589 aaKnown RBP eCLIP11.54□□□□□ -0.56
SHMT2-216ENST00000554975 ENGP17813 658 aa11.54□□□□□ -0.56
SHMT2-216ENST00000554975 CDH5P33151 784 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-216ENST00000554975 PTPN7P35236 360 aa11.54□□□□□ -0.56
SHMT2-216ENST00000554975 PTGIRP43119 386 aa11.54□□□□□ -0.56
SHMT2-216ENST00000554975 MARCKSL1P49006 195 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms