RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 SEMA4GQ9NTN9 838 aa12.91□□□□□ -0.34
SHMT2-214ENST00000554604 INVSQ9Y283 1065 aa12.91□□□□□ -0.34
SHMT2-214ENST00000554604 TCRBV21S2A2A0A5A6 115 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 GRID2IPA4D2P6 1211 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 CCDC151A5D8V7 595 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 CES2O00748 559 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 DCLK1O15075 740 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 SART1O43290 800 aaKnown RBP12.9□□□□□ -0.34
SHMT2-214ENST00000554604 MSI1O43347 362 aaKnown RBP12.9□□□□□ -0.34
SHMT2-214ENST00000554604 FOXD2O60548 495 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-214ENST00000554604 ADAM23O75077 832 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 GABBR2O75899 941 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 RHOBTB1O94844 696 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 TGM1P22735 817 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 WASP42768 502 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 GPD2P43304 727 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 ACADSBP45954 432 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 GALCP54803 685 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 PUM1Q14671 1186 aaKnown RBP eCLIP12.9□□□□□ -0.34
SHMT2-214ENST00000554604 TCEAL1Q15170 157 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 TRIP4Q15650 581 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-214ENST00000554604 CSRP2Q16527 193 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 RSPO4Q2I0M5 234 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-214ENST00000554604 PLK5Q496M5 336 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 EGFLAMQ63HQ2 1017 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 SMYD5Q6GMV2 418 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 DENND1BQ6P3S1 775 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 TMCO3Q6UWJ1 677 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 SLFN11Q7Z7L1 901 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 C11orf74Q86VG3 221 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 RASSF3Q86WH2 238 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 SCUBE3Q8IX30 993 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 CPXM2Q8N436 756 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 CLEC4CQ8WTT0 213 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 ZNF606Q8WXB4 792 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 FAM149B1Q96BN6 582 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 ZC3H10Q96K80 434 aaKnown RBP12.9□□□□□ -0.34
SHMT2-214ENST00000554604 ARRDC1-AS1Q9H2J1 176 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 CDV3Q9UKY7 258 aaKnown RBP12.9□□□□□ -0.34
SHMT2-214ENST00000554604 STARD13Q9Y3M8 1113 aa12.9□□□□□ -0.34
SHMT2-214ENST00000554604 TARSL2A2RTX5 802 aaKnown RBP12.89□□□□□ -0.35
SHMT2-214ENST00000554604 ANKRD62A6NC57 917 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 PRRT4C9JH25 899 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 ZNF185O15231 689 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 MAP3K13O43283 966 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 TSPAN3O60637 253 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 ZRANB2O95218 330 aaKnown RBP eCLIP12.89□□□□□ -0.35
SHMT2-214ENST00000554604 PENKP01210 267 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-214ENST00000554604 CISD3P0C7P0 127 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 CHRM1P11229 460 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-214ENST00000554604 NCAM1P13591 858 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 HOXB2P14652 356 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 HNRNPLP14866 589 aaKnown RBP eCLIP12.89□□□□□ -0.35
SHMT2-214ENST00000554604 MPPE1Q53F39 396 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 ADGRF1Q5T601 910 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 FYB2Q5VWT5 728 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 NUGGCQ68CJ6 796 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 MSANTD2Q6P1R3 559 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 WDR93Q6P2C0 686 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 PRR23CQ6ZRP0 262 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 UNC45BQ8IWX7 931 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 SYCE1Q8N0S2 351 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 MMGT1Q8N4V1 131 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 LRRC57Q8N9N7 239 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 C12orf50Q8NA57 414 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-214ENST00000554604 NOA1Q8NC60 698 aaKnown RBP12.89□□□□□ -0.35
SHMT2-214ENST00000554604 TPCN2Q8NHX9 752 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 STK32AQ8WU08 396 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 UCMAQ8WVF2 138 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 HNRNPLLQ8WVV9 542 aaKnown RBP12.89□□□□□ -0.35
SHMT2-214ENST00000554604 RFFLQ8WZ73 363 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 SPACA7Q96KW9 195 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 CAPZA3Q96KX2 299 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 TRIM62Q9BVG3 475 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 DUSP15Q9H1R2 295 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-214ENST00000554604 ACP6Q9NPH0 428 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.89□□□□□ -0.35
SHMT2-214ENST00000554604 LAMA1P25391 3075 aa12.89□□□□□ -0.35
SHMT2-214ENST00000554604 PDE2AO00408 941 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-214ENST00000554604 CAPN9O14815 690 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 ERLIN1O75477 346 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 EPN2O95208 641 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 LATS1O95835 1130 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 GZMAP12544 262 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 MCM3P25205 808 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 PAFAH1B1P43034 410 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 NOP2P46087 812 aaKnown RBP12.88□□□□□ -0.35
SHMT2-214ENST00000554604 SLC11A2P49281 568 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 HADHBP55084 474 aaKnown RBP12.88□□□□□ -0.35
SHMT2-214ENST00000554604 TBX4P57082 545 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 CREB5Q02930 508 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 BYSLQ13895 437 aaKnown RBP12.88□□□□□ -0.35
SHMT2-214ENST00000554604 E2F5Q15329 346 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 CCDC6Q16204 474 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 ERMP1Q7Z2K6 904 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 DGLUCYQ7Z3D6 616 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 ANKS1BQ7Z6G8 1248 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 FAM217AQ8IXS0 508 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 COG1Q8WTW3 980 aa12.88□□□□□ -0.35
SHMT2-214ENST00000554604 UBE2Q2Q8WVN8 375 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms