RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 ZRANB2O95218 330 aaKnown RBP eCLIP15□□□□□ -0.01
SHMT2-208ENST00000553868 VNN2O95498 520 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 PRB1P04280 392 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 CSH1P0DML2 217 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 CSH2P0DML3 217 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 NCAM1P13591 858 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 GJC1P36383 396 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 VIPR2P41587 438 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 TAS2R40P59535 323 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 COPS2P61201 443 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 ATP11AP98196 1134 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 IFRD2Q12894 506 aaPredicted RBP15□□□□□ -0.01
SHMT2-208ENST00000553868 TAF12Q16514 161 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 CDO1Q16878 200 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 BOLA3Q53S33 107 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 BSPRYQ5W0U4 402 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 BTBD8Q5XKL5 378 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 TRNP1Q6NT89 227 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 PKN3Q6P5Z2 889 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 TXNDC11Q6PKC3 985 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 TCEAL8Q8IYN2 117 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 RASGEF1CQ8N431 466 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 TTC9BQ8N6N2 239 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 PDZD8Q8NEN9 1154 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 SCAMP5Q8TAC9 235 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 MAIP1Q8WWC4 291 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 CENPIQ92674 756 aaPredicted RBP15□□□□□ -0.01
SHMT2-208ENST00000553868 FBXO32Q969P5 355 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 ZSWIM3Q96MP5 696 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 SLITRK1Q96PX8 696 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 TBCBQ99426 244 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 NPY6RQ99463 290 aa15□□□□□ -0.01
SHMT2-208ENST00000553868 TLR8Q9NR97 1041 aaKnown RBP15□□□□□ -0.01
SHMT2-208ENST00000553868 ASCC3Q8N3C0 2202 aaKnown RBP15□□□□□ -0.01
SHMT2-208ENST00000553868 FAM92AA1XBS5 289 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 SLC38A8A6NNN8 435 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 KRT1P04264 644 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 CSRP1P21291 193 aaKnown RBP14.99□□□□□ -0.01
SHMT2-208ENST00000553868 MIPP30301 263 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 HOXA6P31267 233 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 GBP1P32455 592 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 RDXP35241 583 aaKnown RBP14.99□□□□□ -0.01
SHMT2-208ENST00000553868 MARCKSL1P49006 195 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 GPR15P49685 360 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 TERF1P54274 439 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 EPHB3P54753 998 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 CREB5Q02930 508 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 SLC25A11Q02978 314 aaKnown RBP14.99□□□□□ -0.01
SHMT2-208ENST00000553868 LRRC32Q14392 662 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 C15orf59Q2T9L4 293 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-208ENST00000553868 SDHAF4Q5VUM1 108 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 SCYL2Q6P3W7 929 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 SND1Q7KZF4 910 aaKnown RBP eCLIP14.99□□□□□ -0.01
SHMT2-208ENST00000553868 RTL10Q7L3V2 364 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 BHLHA9Q7RTU4 235 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 ZNF572Q7Z3I7 529 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-208ENST00000553868 ITIH5Q86UX2 942 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 CPNE8Q86YQ8 564 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 TTC8Q8TAM2 541 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 RNF139Q8WU17 664 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 HNRNPLLQ8WVV9 542 aaKnown RBP14.99□□□□□ -0.01
SHMT2-208ENST00000553868 TEKT4Q8WW24 435 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 OVCA2Q8WZ82 227 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 NDRG1Q92597 394 aaKnown RBP14.99□□□□□ -0.01
SHMT2-208ENST00000553868 NT5C3BQ969T7 300 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 CDK5RAP1Q96SZ6 601 aaKnown RBP14.99□□□□□ -0.01
SHMT2-208ENST00000553868 TTLL2Q9BWV7 592 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 CRISPLD1Q9H336 500 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 POLR3BQ9NW08 1133 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-208ENST00000553868 YIPF1Q9Y548 306 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 TENM4Q6N022 2769 aa14.99□□□□□ -0.01
SHMT2-208ENST00000553868 ATG2BQ96BY7 2078 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 GOLGA6L10A0A0M3HER8 536 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 M0QYT0 321 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 ARNTLO00327 626 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 DCLK1O15075 740 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 ENDOD1O94919 500 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 TRUB2O95900 331 aaKnown RBP14.98□□□□□ -0.01
SHMT2-208ENST00000553868 RALAP11233 206 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 PSMC3P17980 439 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 AIF1P55008 147 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 DEUP1Q05D60 604 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 PPP2R5EQ16537 467 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 LONRF2Q1L5Z9 754 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 UAP1L1Q3KQV9 507 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 PLK5Q496M5 336 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 DCAF12L1Q5VU92 463 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 TADA2BQ86TJ2 420 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 PSTKQ8IV42 348 aaKnown RBP14.98□□□□□ -0.01
SHMT2-208ENST00000553868 CCDC50Q8IVM0 306 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 MAP7D3Q8IWC1 876 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 PGAP3Q96FM1 320 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-208ENST00000553868 ASB16Q96NS5 453 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 FAM204AQ9H8W3 233 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 ZWILCHQ9H900 591 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 TRPV5Q9NQA5 729 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 OLA1Q9NTK5 396 aaKnown RBP14.98□□□□□ -0.01
SHMT2-208ENST00000553868 CLIC5Q9NZA1 410 aa14.98□□□□□ -0.01
SHMT2-208ENST00000553868 UXTQ9UBK9 157 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-208ENST00000553868 PCSK1NQ9UHG2 260 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms