RNA–Protein interactions for RNA: ENST00000553659.1

ACTN1-209, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 434 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-209ENST00000553659 ADAM23O75077 832 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 SLC1A1P43005 524 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 VSNL1P62760 191 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 KDSRQ06136 332 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 C1QBPQ07021 282 aaKnown RBP16.65■□□□□ 0.26
ACTN1-209ENST00000553659 FOXC1Q12948 553 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 LONRF2Q1L5Z9 754 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 MAP7D1Q3KQU3 841 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 TRIM61Q5EBN2 209 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 ZNF667Q5HYK9 610 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 SPOPLQ6IQ16 392 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 HDXQ7Z353 690 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 SYT12Q8IV01 421 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 TMEFF1Q8IYR6 380 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 MCOLN2Q8IZK6 566 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 KRT222Q8N1A0 295 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 PHTF2Q8N3S3 785 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 FRMD1Q8N878 549 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 SCAMP5Q8TAC9 235 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 KCNV2Q8TDN2 545 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.65■□□□□ 0.264e-7■■■■■ 58.1
ACTN1-209ENST00000553659 ZFRQ96KR1 1074 aaKnown RBP16.65■□□□□ 0.26
ACTN1-209ENST00000553659 PSMB7Q99436 277 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 NUP85Q9BW27 656 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 NUSAP1Q9BXS6 441 aaKnown RBP16.65■□□□□ 0.26
ACTN1-209ENST00000553659 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.65■□□□□ 0.26
ACTN1-209ENST00000553659 IL37Q9NZH6 218 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 CNOT8Q9UFF9 292 aaKnown RBP16.65■□□□□ 0.26
ACTN1-209ENST00000553659 MBD1Q9UIS9 605 aaPredicted RBP16.65■□□□□ 0.26
ACTN1-209ENST00000553659 TMEM59LQ9UK28 342 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 WASF3Q9UPY6 502 aa16.65■□□□□ 0.26
ACTN1-209ENST00000553659 GOLGA6L10A0A0M3HER8 536 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 CCDC66A2RUB6 948 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 TBC1D3BA6NDS4 549 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 C1QTNF9BB2RNN3 333 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 PAEPP09466 180 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 C1QTNF9P0C862 333 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 CTNNA2P26232 953 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 DPP6P42658 865 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 TUBP50607 506 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 UAP1L1Q3KQV9 507 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 PREPLQ4J6C6 727 aaPredicted RBP16.64■□□□□ 0.25
ACTN1-209ENST00000553659 BEND6Q5SZJ8 279 aaPredicted RBP16.64■□□□□ 0.25
ACTN1-209ENST00000553659 BTBD8Q5XKL5 378 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 UNQ6494/PRO21346Q6UXR6 183 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 PAQR9Q6ZVX9 377 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 PHF13Q86YI8 300 aaPredicted RBP16.64■□□□□ 0.25
ACTN1-209ENST00000553659 ETFBKMTQ8IXQ9 262 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 PGBD3Q8N328 593 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 EIF1ADQ8N9N8 165 aaKnown RBP16.64■□□□□ 0.25
ACTN1-209ENST00000553659 HMGB4Q8WW32 186 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 ARID3AQ99856 593 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 ZDHHC4Q9NPG8 344 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 TMEM74BQ9NUR3 256 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 COMMD8Q9NX08 183 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 STIM2Q9P246 746 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 SH3BP1Q9Y3L3 701 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 ALG6Q9Y672 507 aa16.64■□□□□ 0.25
ACTN1-209ENST00000553659 TCRBV21S2A2A0A5A6 115 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 DDX3YO15523 660 aaKnown RBP16.63■□□□□ 0.25
ACTN1-209ENST00000553659 HOXC11O43248 304 aaPredicted RBP16.63■□□□□ 0.25
ACTN1-209ENST00000553659 THAP12O43422 761 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 TULP3O75386 442 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 CALB1P05937 261 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 ZDHHC11BP0C7U3 371 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 PTGER3P43115 390 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 CDH8P55286 799 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 SEL1L2Q5TEA6 688 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 SLC23A3Q6PIS1 610 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 NUDT18Q6ZVK8 323 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 ARMCX6Q7L4S7 300 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 TRMT11Q7Z4G4 463 aaKnown RBP16.63■□□□□ 0.25
ACTN1-209ENST00000553659 FAM35AQ86V20 835 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 BBS7Q8IWZ6 715 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 IFT20Q8IY31 132 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 NAT16Q8N8M0 369 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 TMEM35BQ8NCS4 154 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 SMARCD1Q96GM5 515 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 TNIP3Q96KP6 325 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 RUNDC3BQ96NL0 473 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 MED10Q9BTT4 135 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 SMYD3Q9H7B4 428 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 CCSER2Q9H7U1 834 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 DMAP1Q9NPF5 467 aaPredicted RBP16.63■□□□□ 0.25
ACTN1-209ENST00000553659 SPHK2Q9NRA0 654 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 CISHQ9NSE2 258 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 ZNF446Q9NWS9 450 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 FAM53CQ9NYF3 392 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 DEC1Q9P2X7 70 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 PCDHGC3Q9UN70 934 aa16.63■□□□□ 0.25
ACTN1-209ENST00000553659 PACSIN2Q9UNF0 486 aaPredicted RBP16.63■□□□□ 0.25
ACTN1-209ENST00000553659 FAM92AA1XBS5 289 aa16.62■□□□□ 0.25
ACTN1-209ENST00000553659 DNA2P51530 1060 aa16.62■□□□□ 0.25
ACTN1-209ENST00000553659 SLC5A3P53794 718 aa16.62■□□□□ 0.25
ACTN1-209ENST00000553659 NOMO3P69849 1222 aa16.62■□□□□ 0.25
ACTN1-209ENST00000553659 LYSMD4Q5XG99 296 aa16.62■□□□□ 0.25
ACTN1-209ENST00000553659 DNAAF5Q86Y56 855 aa16.62■□□□□ 0.25
ACTN1-209ENST00000553659 TMEM25Q86YD3 366 aa16.62■□□□□ 0.25
ACTN1-209ENST00000553659 ZNF513Q8N8E2 541 aaPredicted RBP16.62■□□□□ 0.25
ACTN1-209ENST00000553659 KDF1Q8NAX2 398 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms