RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 ZSWIM1Q9BR11 485 aa12.31□□□□□ -0.44
SRP54-203ENST00000553544 AGO1Q9UL18 857 aaKnown RBP12.31□□□□□ -0.44
SRP54-203ENST00000553544 CNTN6Q9UQ52 1028 aa12.31□□□□□ -0.44
SRP54-203ENST00000553544 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.31□□□□□ -0.44
SRP54-203ENST00000553544 MAST4O15021 2626 aa12.31□□□□□ -0.44
SRP54-203ENST00000553544 ZNF462Q96JM2 2506 aa12.31□□□□□ -0.44
SRP54-203ENST00000553544 ENC1O14682 589 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 FGFR1OPO95684 399 aaKnown RBP12.3□□□□□ -0.44
SRP54-203ENST00000553544 LDOC1O95751 146 aaPredicted RBP12.3□□□□□ -0.44
SRP54-203ENST00000553544 DNTTP04053 509 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 HMBSP08397 361 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 CD19P15391 556 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 CORO1AP31146 461 aaKnown RBP12.3□□□□□ -0.44
SRP54-203ENST00000553544 TKTL1P51854 596 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 SLC8A3P57103 927 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 BST2Q10589 180 aaKnown RBP12.3□□□□□ -0.44
SRP54-203ENST00000553544 EFEMP1Q12805 493 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 TARDBPQ13148 414 aaKnown RBP eCLIP12.3□□□□□ -0.44
SRP54-203ENST00000553544 FNDC3BQ53EP0 1204 aaKnown RBP12.3□□□□□ -0.44
SRP54-203ENST00000553544 KCNT1Q5JUK3 1230 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 TMEM215Q68D42 235 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 LCLAT1Q6UWP7 414 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 GPR155Q7Z3F1 870 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 DENND1CQ8IV53 801 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 ARHGEF19Q8IW93 802 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 PPM1KQ8N3J5 372 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 ZNF843Q8N446 348 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 MLKLQ8NB16 471 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 RBBP8NLQ8NC74 664 aaPredicted RBP12.3□□□□□ -0.44
SRP54-203ENST00000553544 SLC35F5Q8WV83 523 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 TFAP2BQ92481 460 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 KREMEN1Q96MU8 473 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 FCRL3Q96P31 734 aaPredicted RBP12.3□□□□□ -0.44
SRP54-203ENST00000553544 ACE2Q9BYF1 805 aaPredicted RBP12.3□□□□□ -0.44
SRP54-203ENST00000553544 NRSN2Q9GZP1 204 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 CLSTN2Q9H4D0 955 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 FBRSQ9HAH7 460 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 SGK2Q9HBY8 427 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 CLEC4EQ9ULY5 219 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 NCKAP1Q9Y2A7 1128 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 PCDHB4Q9Y5E5 795 aa12.3□□□□□ -0.44
SRP54-203ENST00000553544 A0A1B0GTQ1 180 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 TEX51A0A1B0GUA7 166 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 VILLO15195 856 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 TLX3O43711 291 aaPredicted RBP12.29□□□□□ -0.44
SRP54-203ENST00000553544 ZBED1O96006 694 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 ITGAVP06756 1048 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 SETSIPP0DME0 302 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 C7P10643 843 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 ABCB4P21439 1286 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 RACK1P63244 317 aaKnown RBP12.29□□□□□ -0.44
SRP54-203ENST00000553544 IL9RQ01113 521 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 RTP5Q14D33 572 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 CNGA2Q16280 664 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 MPPE1Q53F39 396 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 RRAGAQ7L523 313 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 SCML4Q8N228 414 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 ARHGAP18Q8N392 663 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 CPXM2Q8N436 756 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 UBA3Q8TBC4 463 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 KCTD13Q8WZ19 329 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 GOLGA1Q92805 767 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 FGF11Q92914 225 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 CNDP2Q96KP4 475 aaKnown RBP12.29□□□□□ -0.44
SRP54-203ENST00000553544 ULBP1Q9BZM6 244 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 TMEM245Q9H330 911 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 LMBRD1Q9NUN5 540 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 HESX1Q9UBX0 185 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 SUN2Q9UH99 717 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 RASAL2Q9UJF2 1139 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 STRIP2Q9ULQ0 834 aa12.29□□□□□ -0.44
SRP54-203ENST00000553544 RFPL3O75679 317 aa12.28□□□□□ -0.44
SRP54-203ENST00000553544 GABBR2O75899 941 aa12.28□□□□□ -0.44
SRP54-203ENST00000553544 YWHAGP61981 247 aaKnown RBP eCLIP12.28□□□□□ -0.44
SRP54-203ENST00000553544 RPS14P62263 151 aaKnown RBP12.28□□□□□ -0.44
SRP54-203ENST00000553544 SFSWAPQ12872 951 aaKnown RBP12.28□□□□□ -0.44
SRP54-203ENST00000553544 STILQ15468 1287 aa12.28□□□□□ -0.44
SRP54-203ENST00000553544 TTC31Q49AM3 519 aaPredicted RBP12.28□□□□□ -0.44
SRP54-203ENST00000553544 PRAMEF14Q5SWL7 426 aa12.28□□□□□ -0.44
SRP54-203ENST00000553544 LAYNQ6UX15 382 aa12.28□□□□□ -0.44
SRP54-203ENST00000553544 RSRC2Q7L4I2 434 aaKnown RBP12.28□□□□□ -0.44
SRP54-203ENST00000553544 GANCQ8TET4 914 aa12.28□□□□□ -0.44
SRP54-203ENST00000553544 NDRG1Q92597 394 aaKnown RBP12.28□□□□□ -0.44
SRP54-203ENST00000553544 ELF4Q99607 663 aaPredicted RBP12.28□□□□□ -0.44
SRP54-203ENST00000553544 INTS2Q9H0H0 1204 aaKnown RBP12.28□□□□□ -0.44
SRP54-203ENST00000553544 LRRC4Q9HBW1 653 aa12.28□□□□□ -0.44
SRP54-203ENST00000553544 PRSS16Q9NQE7 514 aa12.28□□□□□ -0.44
SRP54-203ENST00000553544 MARCH2Q9P0N8 246 aa12.28□□□□□ -0.44
SRP54-203ENST00000553544 TENM4Q6N022 2769 aa12.28□□□□□ -0.44
SRP54-203ENST00000553544 SLC12A8A0AV02 714 aa12.27□□□□□ -0.45
SRP54-203ENST00000553544 J3QKU1 62 aa12.27□□□□□ -0.45
SRP54-203ENST00000553544 ATP5BP06576 529 aaKnown RBP12.27□□□□□ -0.45
SRP54-203ENST00000553544 HARS2P49590 506 aaKnown RBP12.27□□□□□ -0.45
SRP54-203ENST00000553544 CFHR1Q03591 330 aa12.27□□□□□ -0.45
SRP54-203ENST00000553544 ADIGQ0VDE8 80 aa12.27□□□□□ -0.45
SRP54-203ENST00000553544 KIAA0895LQ68EN5 471 aa12.27□□□□□ -0.45
SRP54-203ENST00000553544 PMF1Q6P1K2 205 aa12.27□□□□□ -0.45
SRP54-203ENST00000553544 TRIM65Q6PJ69 517 aa12.27□□□□□ -0.45
SRP54-203ENST00000553544 GATAD2AQ86YP4 633 aa12.27□□□□□ -0.45
SRP54-203ENST00000553544 WFIKKN2Q8TEU8 576 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms