RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 FAM58BPP0C7Q3 252 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 HDCP19113 662 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 EIF4BP23588 611 aaKnown RBP4.98□□□□□ -1.61
LIMA1-214ENST00000552783 EPHX2P34913 555 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ETFBP38117 255 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 MAGEA3P43357 314 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ASPAP45381 313 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 XIAPP98170 497 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 PFKPQ01813 784 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 GBE1Q04446 702 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 TBCCQ15814 346 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 PIGGQ5H8A4 983 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 DCAF15Q66K64 600 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 KCNT2Q6UVM3 1135 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 AHI1Q8N157 1196 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 PCDH19Q8TAB3 1148 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 UBA3Q8TBC4 463 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 JADE3Q92613 823 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 LPAR1Q92633 364 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 SLX1AQ9BQ83 275 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 NRDE2Q9H7Z3 1164 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 COQ10BQ9H8M1 238 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF408Q9H9D4 720 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 XPNPEP3Q9NQH7 507 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 PFDN4Q9NQP4 134 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 OLAHQ9NV23 265 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 MOCS1Q9NZB8 636 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 EPS15L1Q9UBC2 864 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 STK39Q9UEW8 545 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 CIDEBQ9UHD4 219 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 SFMBT1Q9UHJ3 866 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 HACL1Q9UJ83 578 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 ADGRA2Q96PE1 1338 aa4.98□□□□□ -1.61
LIMA1-214ENST00000552783 RGPD3A6NKT7 1758 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 RGPD4Q7Z3J3 1758 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 KIAA1217Q5T5P2 1943 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TTC36A6NLP5 189 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 XPOTO43592 962 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 STRNO43815 780 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 KRT38O76015 456 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TNFAIP8O95379 198 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ERVK-10P10266 1014 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ENO3P13929 434 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 MPSTP25325 297 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 GMPSP49915 693 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ABCE1P61221 599 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 BTG3Q14201 252 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 STXBP2Q15833 593 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 USP41Q3LFD5 358 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 MGAT5BQ3V5L5 792 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF362Q5T0B9 420 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TREML2Q5T2D2 321 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 OGFOD2Q6N063 350 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CASC4Q6P4E1 433 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 FASTKD5Q7L8L6 764 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ARCQ7LC44 396 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ZBTB8OSQ8IWT0 167 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CHERPQ8IWX8 916 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TMEM192Q8IY95 271 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 BBS5Q8N3I7 341 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ZBTB8BQ8NAP8 495 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TSPAN14Q8NG11 270 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 UPF1Q92900 1129 aaKnown RBP eCLIP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CMTM5Q96DZ9 223 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 LRGUKQ96M69 825 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 NPAS2Q99743 824 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 EBNA1BP2Q99848 306 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 UNKQ9C0B0 810 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 NAA50Q9GZZ1 169 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 SUDS3Q9H7L9 328 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CAAP1Q9H8G2 361 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 AS3MTQ9HBK9 375 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 NGRNQ9NPE2 291 aaKnown RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ANLNQ9NQW6 1124 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ANKEF1Q9NU02 776 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 MKS1Q9NXB0 559 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 NDUFA13Q9P0J0 144 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 COPG2Q9UBF2 871 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TUBGCP4Q9UGJ1 667 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 MAGED2Q9UNF1 606 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 PRSS51A0A1B0GVH4 220 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 KLRG2A4D1S0 409 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TMEM233B4DJY2 109 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 VWA5AO00534 786 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 NRP1O14786 923 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 FAM189A1O60320 539 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 ENDOD1O94919 500 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 CLIC3O95833 236 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 SERPINE1P05121 402 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 KRT7P08729 469 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 RALBP11234 206 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TSHRP16473 764 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 PIK3R1P27986 724 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 MLH1P40692 756 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 PTGER2P43116 358 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 MAPK10P53779 464 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 SLC5A3P53794 718 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 NR1H2P55055 460 aa4.97□□□□□ -1.61
LIMA1-214ENST00000552783 SESN2P58004 480 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-214ENST00000552783 TGFB2P61812 414 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms