RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CYP2C9P11712 490 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 EIF2AK2P19525 551 aaKnown RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 COMTP21964 271 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 TECP42680 631 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 VCPP55072 806 aaKnown RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 CAMK2BQ13554 666 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 DPYSQ14117 519 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 TGFBIQ15582 683 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 KCTD21Q4G0X4 260 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 ZC3H12BQ5HYM0 836 aaKnown RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 MARCH8Q5T0T0 291 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 KRT39Q6A163 491 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 PRR23CQ6ZRP0 262 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 DCDC5Q6ZRR9 648 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 ARCQ7LC44 396 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 DCLK2Q8N568 766 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 RFWD2Q8NHY2 731 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 SNX29Q8TEQ0 813 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 ATP6V0A1Q93050 837 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 APOPT1Q96IL0 206 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 ZNF641Q96N77 438 aaPredicted RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 MTG1Q9BT17 334 aaPredicted RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 NFKBIZQ9BYH8 718 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 IMPG2Q9BZV3 1241 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 THAP2Q9H0W7 228 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 C11orf49Q9H6J7 331 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 CLK4Q9HAZ1 481 aaKnown RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 VAT1LQ9HCJ6 419 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 JPH1Q9HDC5 661 aaPredicted RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 TUFT1Q9NNX1 390 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 ATAD3AQ9NVI7 634 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 CLUHO75153 1309 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 hCG_1642624A0A1W2PR95 340 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 E7ESA3 106 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 SLC4A1P02730 911 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 CXCL10P02778 98 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 CCDC130P13994 396 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 RAC2P15153 192 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 CHRNB2P17787 502 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 RFC2P35250 354 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 PPM1FP49593 454 aaPredicted RBP5.4□□□□□ -1.54
USP28-213ENST00000544967 AQP4P55087 323 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 ITGA7Q13683 1181 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 KIAA1841Q6NSI8 718 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 SLC39A5Q6ZMH5 540 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 RNF180Q86T96 592 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 CCDC25Q86WR0 208 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 C4orf19Q8IY42 314 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 CRIPAKQ8N1N5 446 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 PQLC1Q8N2U9 271 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 TTC13Q8NBP0 860 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 KCNK16Q96T55 309 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 CTRCQ99895 268 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 NUF2Q9BZD4 464 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 ALG2Q9H553 416 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 ACSS3Q9H6R3 686 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 C10orf88Q9H8K7 445 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 C8orf4Q9NR00 106 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 SMYD2Q9NRG4 433 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 RRN3Q9NYV6 651 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 GTF2IRD1Q9UHL9 959 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 GTF2A1LQ9UNN4 478 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 RGS13O14921 159 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 HGSO14964 777 aaPredicted RBP5.4□□□□□ -1.54
USP28-213ENST00000544967 OR6B1O95007 311 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 LGALS2P05162 132 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 PSMC2P35998 433 aaKnown RBP5.4□□□□□ -1.54
USP28-213ENST00000544967 TMED10P49755 219 aaKnown RBP5.4□□□□□ -1.54
USP28-213ENST00000544967 ARL4CP56559 192 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 SNRPFP62306 86 aaKnown RBP5.4□□□□□ -1.54
USP28-213ENST00000544967 DLG1Q12959 904 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 DRAP1Q14919 205 aaPredicted RBP5.4□□□□□ -1.54
USP28-213ENST00000544967 MOGQ16653 247 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 DGKDQ16760 1214 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 FBXL19Q6PCT2 694 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 SLC2A7Q6PXP3 512 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 SERINC5Q86VE9 423 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 GLYCTKQ8IVS8 523 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.4□□□□□ -1.54
USP28-213ENST00000544967 DDHD1Q8NEL9 900 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 CYP2W1Q8TAV3 490 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 PRR7Q8TB68 274 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 GIPC3Q8TF64 312 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 TRUB1Q8WWH5 349 aaKnown RBP5.4□□□□□ -1.54
USP28-213ENST00000544967 KRT35Q92764 455 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 RNF34Q969K3 372 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 CMTM5Q96DZ9 223 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 ASB16Q96NS5 453 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 RBM15Q96T37 977 aaKnown RBP eCLIP5.4□□□□□ -1.54
USP28-213ENST00000544967 NEURL2Q9BR09 285 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 TRPC7Q9HCX4 862 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 SLC9A2Q9UBY0 812 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 ZNF180Q9UJW8 692 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 INPP5FQ9Y2H2 1132 aa5.4□□□□□ -1.54
USP28-213ENST00000544967 IQANK1A0A1B0GTG1 560 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 RSPH10B2B2RC85 870 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 TMEM114B3SHH9 223 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 ARVCFO00192 962 aa5.4□□□□□ -1.55
USP28-213ENST00000544967 FOXN3O00409 490 aaPredicted RBP5.4□□□□□ -1.55
USP28-213ENST00000544967 SULT1C4O75897 302 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms