RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 C1QTNF3-AMACRE9PGA6 284 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 DUSP11O75319 330 aaKnown RBP7.99□□□□□ -1.13
VPS13D-211ENST00000543710 GUCY1B2O75343 617 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 FKBP9O95302 570 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 NFATC1O95644 943 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 ERVK-10P10266 1014 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 IL12AP29459 219 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 POLD3Q15054 466 aaPredicted RBP7.99□□□□□ -1.13
VPS13D-211ENST00000543710 USP41Q3LFD5 358 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 ERMARDQ5T6L9 678 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 TTI2Q6NXR4 508 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 USP17L6PQ6QN14 398 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 TMEM26Q6ZUK4 368 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 ANKMY2Q8IV38 441 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 HEXDCQ8WVB3 486 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 UBE2E3Q969T4 207 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 MOCOSQ96EN8 888 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 L3MBTL3Q96JM7 780 aaPredicted RBP7.99□□□□□ -1.13
VPS13D-211ENST00000543710 P2RX7Q99572 595 aaKnown RBP7.99□□□□□ -1.13
VPS13D-211ENST00000543710 CIPCQ9C0C6 399 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 ZFYVE1Q9HBF4 777 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 MBD2Q9UBB5 411 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 CENPXA8MT69 81 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 CTDNEP1O95476 244 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 MMP3P08254 477 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 SLC2A4P14672 509 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 SMIM11AP58511 58 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 GPAT2Q6NUI2 795 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 ZPBP2Q6X784 338 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 SLFN11Q7Z7L1 901 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 GSPT2Q8IYD1 628 aaKnown RBP7.99□□□□□ -1.13
VPS13D-211ENST00000543710 PXYLP1Q8TE99 480 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 MTMR9Q96QG7 549 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 APOL5Q9BWW9 433 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 NDUFAF1Q9Y375 327 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 XRN1Q8IZH2 1706 aaKnown RBP7.99□□□□□ -1.13
VPS13D-211ENST00000543710 PCDH8O95206 1070 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CNPP09543 421 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CCNA2P20248 432 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 KELP23276 732 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PTPN3P26045 913 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 NMT1P30419 496 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 TMED10P49755 219 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 ANKS6Q68DC2 871 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PTRHD1Q6GMV3 140 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 TRPM4Q8TD43 1214 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 Q96MT0 163 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 KLHL11Q9NVR0 708 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 UBA2Q9UBT2 640 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 NAGPAQ9UK23 515 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 ZNF711Q9Y462 761 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 FAM196BA6NMK8 535 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 F5H5T6 163 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 GUCA1CO95843 209 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 RRM1P23921 792 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 HTR1BP28222 390 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 FXR1P51114 621 aaKnown RBP eCLIP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CSE1LP55060 971 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 MARSP56192 900 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 RAB25P57735 213 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CDC16Q13042 620 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 RRP1BQ14684 758 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 TRIM16LQ309B1 348 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 RFX4Q33E94 735 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CEP78Q5JTW2 689 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 KLHL35Q6PF15 583 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CATSPER3Q86XQ3 398 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 TMEM132CQ8N3T6 1108 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 KYQ8NBH2 561 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PHC3Q8NDX5 983 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 ZNF483Q8TF39 744 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 HPDLQ96IR7 371 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CNPPD1Q9BV87 410 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 ZCCHC2Q9C0B9 1178 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 NEK6Q9HC98 313 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 EPB41L4AQ9HCS5 686 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CCNB1IP1Q9NPC3 277 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 ATAD3AQ9NVI7 634 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 C6orf203Q9P0P8 240 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CD207Q9UJ71 328 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PCDHGC5Q9Y5F6 944 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 DNM1LO00429 736 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 LGR5O75473 907 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 BAIAP3O94812 1187 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CYP11B1P15538 503 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 EIF4BP23588 611 aaKnown RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 DNAJB1P25685 340 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 COPZ1P61923 177 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 SLC44A4Q53GD3 710 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 RASAL3Q86YV0 1011 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 LRRC34Q8IZ02 419 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 TAB3Q8N5C8 712 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PIGUQ9H490 435 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 FBXO44Q9H4M3 255 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 ASB7Q9H672 318 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 PRDM8Q9NQV8 689 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 CHST12Q9NRB3 414 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 ZNF510Q9Y2H8 683 aa7.98□□□□□ -1.13
VPS13D-211ENST00000543710 ASTN2O75129 1339 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-211ENST00000543710 BTBD19C9JJ37 291 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms