RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 APOBEC3GQ9HC16 384 aaKnown RBP5.38□□□□□ -1.55
CLIP1-217ENST00000543205 CLDND1Q9NY35 253 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 GCNT4Q9P109 453 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 PDP2Q9P2J9 529 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 LIMA1Q9UHB6 759 aaKnown RBP5.38□□□□□ -1.55
CLIP1-217ENST00000543205 POLHQ9Y253 713 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 PLXNA4Q9HCM2 1894 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 A8MXQ7 604 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 ADAM12O43184 909 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 TGM5O43548 720 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 TBC1D4O60343 1298 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 DNAJA2O60884 412 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 LRRN2O75325 713 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 C1RP00736 705 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 SERPINC1P01008 464 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 ASLP04424 464 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 WEE2P0C1S8 567 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 OR4Q2P0C623 313 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 SPATA31D3P0C874 917 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 EPCAMP16422 314 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 CD58P19256 250 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 TBXAS1P24557 533 aaPredicted RBP5.38□□□□□ -1.55
CLIP1-217ENST00000543205 ACAT1P24752 427 aaKnown RBP5.38□□□□□ -1.55
CLIP1-217ENST00000543205 KRT20P35900 424 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 ASPAP45381 313 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 RAP1GAPP47736 663 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 COPB1P53618 953 aaKnown RBP5.38□□□□□ -1.55
CLIP1-217ENST00000543205 CDH8P55286 799 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 KLF1Q13351 362 aaPredicted RBP5.38□□□□□ -1.55
CLIP1-217ENST00000543205 ADAM15Q13444 863 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 FILIP1LQ4L180 1135 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 SLC39A12Q504Y0 691 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 LIN9Q5TKA1 542 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 TPGS2Q68CL5 300 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 SPATA31D4Q6ZUB0 917 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 CCDC149Q6ZUS6 474 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 LIMS2Q7Z4I7 341 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 OSTM1Q86WC4 334 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 TTC39CQ8N584 583 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 LSMEM1Q8N8F7 131 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 KREMEN2Q8NCW0 462 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 FLCNQ8NFG4 579 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 OR10T2Q8NGX3 314 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 ZNF461Q8TAF7 563 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 SLC22A17Q8WUG5 538 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 KBTBD7Q8WVZ9 684 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 IPCEF1Q8WWN9 437 aaPredicted RBP5.38□□□□□ -1.55
CLIP1-217ENST00000543205 WFDC12Q8WWY7 111 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 PABPC5Q96DU9 382 aaKnown RBP5.38□□□□□ -1.55
CLIP1-217ENST00000543205 SYT15Q9BQS2 421 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 ZCWPW1Q9H0M4 648 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 HSD3B7Q9H2F3 369 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 FAM86C1Q9NVL1 165 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 CEP72Q9P209 647 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 CDH9Q9ULB4 789 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 MAFFQ9ULX9 164 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 AP4E1Q9UPM8 1137 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 HCFC2Q9Y5Z7 792 aa5.38□□□□□ -1.55
CLIP1-217ENST00000543205 WDR27A2RRH5 827 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 BLACEA4D250 179 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 MEGF11A6BM72 1044 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 PRRG1O14668 218 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 LINC01565O15544 149 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 ATP1A3P13637 1013 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 ATF2P15336 505 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 PTPN1P18031 435 aaKnown RBP5.37□□□□□ -1.55
CLIP1-217ENST00000543205 SLC9A1P19634 815 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 LMO2P25791 158 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 PON1P27169 355 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 NOS3P29474 1203 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 NDST1P52848 882 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 MFAP3P55082 362 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 PSMC1P62191 440 aaKnown RBP5.37□□□□□ -1.55
CLIP1-217ENST00000543205 PFKPQ01813 784 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 UBXN1Q04323 297 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 SMARCB1Q12824 385 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 GPR17Q13304 367 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 CUL2Q13617 745 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 PIK3R6Q5UE93 754 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 ANKRD34AQ69YU3 496 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 ANKRD54Q6NXT1 300 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 PGM2L1Q6PCE3 622 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 TRIM65Q6PJ69 517 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 TMEM184AQ6ZMB5 413 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 RRAGAQ7L523 313 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 UNC93AQ86WB7 457 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 SPATA2LQ8IUW3 424 aaPredicted RBP5.37□□□□□ -1.55
CLIP1-217ENST00000543205 C12orf50Q8NA57 414 aaPredicted RBP5.37□□□□□ -1.55
CLIP1-217ENST00000543205 RNF214Q8ND24 703 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 OR2W6PQ8NHA6 318 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 LMO3Q8TAP4 145 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 C2orf15Q8WU43 125 aaKnown RBP5.37□□□□□ -1.55
CLIP1-217ENST00000543205 HDAC7Q8WUI4 952 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 KIAA1191Q96A73 305 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 SH3KBP1Q96B97 665 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 UBXN10Q96LJ8 280 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 FAM81BQ96LP2 452 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 PGLYRP2Q96PD5 576 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 TMEM209Q96SK2 561 aa5.37□□□□□ -1.55
CLIP1-217ENST00000543205 RTP3Q9BQQ7 232 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms