RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 AIF1P55008 147 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 FAAP100Q0VG06 881 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 SLC1A5Q15758 541 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 NUGGCQ68CJ6 796 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 FUT10Q6P4F1 479 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 FCRL2Q96LA5 508 aaPredicted RBP14.92□□□□□ -0.02
CLIP1-216ENST00000541410 PAK6Q9NQU5 681 aaPredicted RBP14.92□□□□□ -0.02
CLIP1-216ENST00000541410 PCDHB5Q9Y5E4 795 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 IKBKGQ9Y6K9 419 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 KIAA0100Q14667 2235 aaKnown RBP14.92□□□□□ -0.02
CLIP1-216ENST00000541410 C2CD2LO14523 706 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 HMBSP08397 361 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 INHBAP08476 426 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 F7P08709 466 aaPredicted RBP14.92□□□□□ -0.02
CLIP1-216ENST00000541410 TPSB2P20231 275 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 FOXN2P32314 431 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 TPSAB1Q15661 275 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 FAM117BQ6P1L5 589 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 C14orf80Q86SX3 495 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 MIB1Q86YT6 1006 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 MCUQ8NE86 351 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 GIPC2Q8TF65 315 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 THOC1Q96FV9 657 aaKnown RBP14.92□□□□□ -0.02
CLIP1-216ENST00000541410 GORASP1Q9BQQ3 440 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 DHRS4Q9BTZ2 278 aa14.92□□□□□ -0.02
CLIP1-216ENST00000541410 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 WDR91A4D1P6 747 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 TRIM66O15016 1216 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 OPHN1O60890 802 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 C1QAP02745 245 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 GALTP07902 379 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 GARSP41250 739 aaKnown RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 MAGEA3P43357 314 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 EFEMP1Q12805 493 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 EIF4EBP2Q13542 120 aaPredicted RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 BMPR2Q13873 1038 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 NFE2Q16621 373 aaPredicted RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 TRIM60Q495X7 471 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 GKAP1Q5VSY0 366 aaPredicted RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 ZNF280DQ6N043 979 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 FAM47EQ6ZV65 393 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 MZB1Q8WU39 189 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 SERAC1Q96JX3 654 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 TGS1Q96RS0 853 aaKnown RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 EBNA1BP2Q99848 306 aaKnown RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 SMOC2Q9H3U7 446 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 NEU3Q9UQ49 428 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 SRRM3A6NNA2 597 aaPredicted RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 SYN3O14994 580 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 ADAM12O43184 909 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 VNN2O95498 520 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 JCHAINP01591 159 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 PAX3P23760 479 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 CCR1P32246 355 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 CD68P34810 354 aaPredicted RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 FDFT1P37268 417 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 PPIDQ08752 370 aaKnown RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 DUSP4Q13115 394 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 RNF187Q5TA31 235 aaPredicted RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 NPAS4Q8IUM7 802 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 OR52K1Q8NGK4 314 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 DIS3LQ8TF46 1054 aaKnown RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 CKAP2Q8WWK9 683 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 CABS1Q96KC9 395 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 ELAC1Q9H777 363 aaKnown RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 ALG13Q9NP73 1137 aaKnown RBP14.91□□□□□ -0.02
CLIP1-216ENST00000541410 ARHGEF38Q9NXL2 777 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 GGT7Q9UJ14 662 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 ACTL7BQ9Y614 415 aa14.91□□□□□ -0.02
CLIP1-216ENST00000541410 SF3B1O75533 1304 aaKnown RBP eCLIP14.9□□□□□ -0.02
CLIP1-216ENST00000541410 PITPNM1O00562 1244 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 APOEP02649 317 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 CSH1P0DML2 217 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 CSH2P0DML3 217 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 HCAR3P49019 387 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 TLE2Q04725 743 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 NR1H3Q13133 447 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 C4orf22Q6V702 233 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 PDZD4Q76G19 769 aaPredicted RBP14.9□□□□□ -0.02
CLIP1-216ENST00000541410 CACNA2D3Q8IZS8 1091 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 SCML4Q8N228 414 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 SLC44A1Q8WWI5 657 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 FERMT1Q9BQL6 677 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 SYBUQ9NX95 663 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 SLC17A7Q9P2U7 560 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 CDY1Q9Y6F8 540 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 GREB1Q4ZG55 1949 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 NYNRINQ9P2P1 1898 aaKnown RBP14.9□□□□□ -0.02
CLIP1-216ENST00000541410 CCDC78A2IDD5 438 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 MTMR11A4FU01 709 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 NFKB1P19838 968 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 FGFR3P22607 806 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 TUBP50607 506 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 PRMT2P55345 433 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 TAF10Q12962 218 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 MRPL58Q14197 206 aaKnown RBP14.9□□□□□ -0.02
CLIP1-216ENST00000541410 PARP6Q2NL67 630 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 RASIP1Q5U651 963 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 OTOP3Q7RTS5 596 aa14.9□□□□□ -0.02
CLIP1-216ENST00000541410 TFAP2DQ7Z6R9 452 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms