RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 SERPINA6P08185 405 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 MAGEA3P43357 314 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 MAGEA6P43360 314 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 SLC10A2Q12908 348 aaPredicted RBP12.86□□□□□ -0.35
RNF4-222ENST00000541204 NME3Q13232 169 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 TRMT5Q32P41 509 aaKnown RBP12.86□□□□□ -0.35
RNF4-222ENST00000541204 PAN2Q504Q3 1202 aaKnown RBP12.86□□□□□ -0.35
RNF4-222ENST00000541204 C6orf163Q5TEZ5 329 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 FOXB2Q5VYV0 432 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 ARHGAP17Q68EM7 881 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 SLC30A9Q6PML9 568 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 IZUMO2Q6UXV1 221 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 RASAL3Q86YV0 1011 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 MYLK4Q86YV6 388 aaPredicted RBP12.86□□□□□ -0.35
RNF4-222ENST00000541204 DEFB106AQ8N104 65 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 PPP1R14CQ8TAE6 165 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 ADAM32Q8TC27 787 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 WNT8BQ93098 351 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 GAD1Q99259 594 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 DDX50Q9BQ39 737 aaKnown RBP12.86□□□□□ -0.35
RNF4-222ENST00000541204 NRDE2Q9H7Z3 1164 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 XAB2Q9HCS7 855 aaKnown RBP12.86□□□□□ -0.35
RNF4-222ENST00000541204 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.86□□□□□ -0.35
RNF4-222ENST00000541204 MAGEA13PA6NCF6 341 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 DPYSL4O14531 572 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 CLGNO14967 610 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 SETSIPP0DME0 302 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 GOT1P17174 413 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 CTGFP29279 349 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 AXLP30530 894 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 L1CAMP32004 1257 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 RGS2P41220 211 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 PAPOLAP51003 745 aaKnown RBP12.86□□□□□ -0.35
RNF4-222ENST00000541204 SMAD1Q15797 465 aaKnown RBP12.86□□□□□ -0.35
RNF4-222ENST00000541204 SV2CQ496J9 727 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 DNAL1Q4LDG9 190 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 FASTKD1Q53R41 847 aaKnown RBP12.86□□□□□ -0.35
RNF4-222ENST00000541204 APLFQ8IW19 511 aaPredicted RBP12.86□□□□□ -0.35
RNF4-222ENST00000541204 CRYBG2Q8N1P7 616 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 MCUQ8NE86 351 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 LRRC39Q96DD0 335 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 IFT43Q96FT9 208 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 KCTD15Q96SI1 283 aaPredicted RBP12.86□□□□□ -0.35
RNF4-222ENST00000541204 CEP41Q9BYV8 373 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 THAP1Q9NVV9 213 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 PPM1HQ9ULR3 514 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 CDY2AQ9Y6F7 541 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 SDR42E2A6NKP2 422 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 KIF3CO14782 793 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 BIRC5O15392 142 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 SULT1E1P49888 294 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 MAP3K7CLP57077 242 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 SNX16P57768 344 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 AP2B1P63010 937 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 CRADDP78560 199 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 SLC25A3Q00325 362 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 GSTCDQ8NEC7 633 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 APBB2Q92870 758 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 ZNF778Q96MU6 729 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 ARHGAP39Q9C0H5 1083 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 PIH1D1Q9NWS0 290 aaKnown RBP12.86□□□□□ -0.35
RNF4-222ENST00000541204 NDE1Q9NXR1 346 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.86□□□□□ -0.35
RNF4-222ENST00000541204 PCDHA11Q9Y5I1 949 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 CASTOR2A6NHX0 329 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 XPOTO43592 962 aaKnown RBP12.85□□□□□ -0.35
RNF4-222ENST00000541204 GSRP00390 522 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 KCNE1P15382 129 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 RPL10AP62906 217 aaKnown RBP12.85□□□□□ -0.35
RNF4-222ENST00000541204 WASHC5Q12768 1159 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 KIAA0319Q5VV43 1072 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 SLC26A9Q7LBE3 791 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 CCNJLQ8IV13 435 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 POU5F2Q8N7G0 328 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 TRPV1Q8NER1 839 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 RAB3IL1Q8TBN0 382 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 TNIP3Q96KP6 325 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 PAAF1Q9BRP4 392 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 GDAP2Q9NXN4 497 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 ST3GAL5Q9UNP4 418 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 A0A088AWK7 358 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 CREB3O43889 395 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 GSTA2P09210 222 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 ZCCHC18P0CG32 403 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 CPOXP36551 454 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 PNPLA4P41247 253 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 CLCNKBP51801 687 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 DSG1Q02413 1049 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 CASC4Q6P4E1 433 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 KCNT2Q6UVM3 1135 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 C17orf99Q6UX52 265 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 HFE2Q6ZVN8 426 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 CSPG4P5Q96PW8 444 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 KCNK16Q96T55 309 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 SH3GL3Q99963 347 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 MTMR10Q9NXD2 777 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 DNAJC16Q9Y2G8 782 aa12.85□□□□□ -0.35
RNF4-222ENST00000541204 WDR27A2RRH5 827 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 ARHGAP42A6NI28 874 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 M0QZ92 97 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms