RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 GRIA2P42262 883 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 DGKGP49619 791 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 PTPN5P54829 565 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 TCF15Q12870 199 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 ZNF177Q13360 481 aaPredicted RBP18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 CDH18Q13634 790 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 EIF4HQ15056 248 aaKnown RBP18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 C6orf118Q5T5N4 469 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 NADSYN1Q6IA69 706 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 GRAMD4Q6IC98 578 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 FBXL22Q6P050 247 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 TPRG1Q6ZUI0 275 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 TPCN2Q8NHX9 752 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 FIBINQ8TAL6 211 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 UCMAQ8WVF2 138 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 TBC1D31Q96DN5 1066 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 PRRX2Q99811 253 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 ADAM33Q9BZ11 813 aa18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 KIAA1522Q9P206 1035 aaPredicted RBP18.07■□□□□ 0.48
CLSTN3-210ENST00000540931 CXorf51AA0A1B0GTR3 108 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 MIF4GDA9UHW6 222 aaKnown RBP18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 ZNF487B1APH4 448 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 H0Y626 953 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 PSTPIP1O43586 416 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 LUC7L3O95232 432 aaKnown RBP18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 RHOQP17081 205 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 SLC6A4P31645 630 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 CETN2P41208 172 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 TNFRSF4P43489 277 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 MAPKAPK2P49137 400 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 DPYSL2Q16555 572 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 HSF5Q4G112 596 aaPredicted RBP18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 MFN1Q8IWA4 741 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 ETFBKMTQ8IXQ9 262 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 SIX5Q8N196 739 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 LZTR1Q8N653 840 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 CCDC185Q8N715 623 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 ST13P5Q8NFI4 369 aaPredicted RBP18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 DESI2Q9BSY9 194 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 TRIM7Q9C029 511 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 DNAJC17Q9NVM6 304 aaKnown RBP18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 PCSK1NQ9UHG2 260 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 VANGL2Q9ULK5 521 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 PPP2R2CQ9Y2T4 447 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 ALG6Q9Y672 507 aa18.06■□□□□ 0.48
CLSTN3-210ENST00000540931 CCDC66A2RUB6 948 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 H3BRJ5 948 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 DAPK3O43293 454 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 BUB1BO60566 1050 aaPredicted RBP18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 SRGAP2O75044 1071 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 TULP3O75386 442 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 HOXD9P28356 352 aaPredicted RBP18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 ATXN1P54253 815 aaKnown RBP18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 TPI1P60174 286 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 SULT2A1Q06520 285 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 HS1BP3Q53T59 392 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 ZFYVE27Q5T4F4 411 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 RFWD3Q6PCD5 774 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 TRMT11Q7Z4G4 463 aaKnown RBP18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 AHI1Q8N157 1196 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 FBXL6Q8N531 539 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 ARFGAP1Q8N6T3 406 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 TRIM58Q8NG06 486 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 SNRNP25Q9BV90 132 aaKnown RBP18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 LACRTQ9GZZ8 138 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 DHX35Q9H5Z1 703 aaKnown RBP18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 CA14Q9ULX7 337 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 USP34Q70CQ2 3546 aa18.05■□□□□ 0.48
CLSTN3-210ENST00000540931 GOLGA6L7A0A1B0GV03 622 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 EEF2KO00418 725 aaKnown RBP18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 STK25O00506 426 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 TSPAN3O60637 253 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 ATG13O75143 517 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 EPHB2P29323 1055 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 HOXC13P31276 330 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 SLC25A11Q02978 314 aaKnown RBP18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 KRT81Q14533 505 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 TMEM196Q5HYL7 178 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 MANEALQ5VSG8 457 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 ANKS1BQ7Z6G8 1248 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 CCAR2Q8N163 923 aaKnown RBP18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 UBL4BQ8N7F7 174 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 KCTD6Q8NC69 237 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 BTBD6Q96KE9 485 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 ARHGEF4Q9NR80 690 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 XPO7Q9UIA9 1087 aaKnown RBP18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 AMFRQ9UKV5 643 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 GUCA1BQ9UMX6 200 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 TBC1D30Q9Y2I9 924 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 ZFHX2Q9C0A1 2572 aaPredicted RBP18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 TICRRQ7Z2Z1 1910 aa18.04■□□□□ 0.48
CLSTN3-210ENST00000540931 MACROD2A1Z1Q3 448 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 TBC1D3BA6NDS4 549 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 RCCD1A6NED2 376 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 OTOL1A6NHN0 477 aaPredicted RBP18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 TMEM110-MUSTN1A8MSY1 372 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 WASH4PA8MWX3 477 aa18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 SCAMP3O14828 347 aaKnown RBP18.03■□□□□ 0.48
CLSTN3-210ENST00000540931 BUB1O43683 1085 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms