RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 ZYG11BQ9C0D3 744 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 TUBGCP4Q9UGJ1 667 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 DYRK3O43781 588 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 TGM3Q08188 693 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 PPIGQ13427 754 aaKnown RBP eCLIP14.42□□□□□ -0.13e-6■■■□□ 15.7
USP3-204ENST00000540797 AASDHQ4L235 1098 aaPredicted RBP14.42□□□□□ -0.1
USP3-204ENST00000540797 MIIPQ5JXC2 388 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 LONP2Q86WA8 852 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 TNIP2Q8NFZ5 429 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 GPR152Q8TDT2 470 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 ABHD8Q96I13 439 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 ELOVL6Q9H5J4 265 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 L2HGDHQ9H9P8 463 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 ABCC6O95255 1503 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 MOXD2PA6NHM9 499 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 STAU1O95793 577 aaKnown RBP14.42□□□□□ -0.1
USP3-204ENST00000540797 SPATA31D3P0C874 917 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 CPA3P15088 417 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 CDH2P19022 906 aaPredicted RBP14.42□□□□□ -0.1
USP3-204ENST00000540797 TSHZ1Q6ZSZ6 1077 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 SPATA31D4Q6ZUB0 917 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 SYTL1Q8IYJ3 562 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 ZNF513Q8N8E2 541 aaPredicted RBP14.42□□□□□ -0.1
USP3-204ENST00000540797 C4orf32Q8N8J7 132 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 ECSITQ9BQ95 431 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 GANQ9H2C0 597 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 TLE6Q9H808 572 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 GOLGA2P5Q9HBQ8 144 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 RAD23BP54727 409 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 KBTBD12Q3ZCT8 623 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 PDPK2PQ6A1A2 396 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 DLK2Q6UY11 383 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 C7orf61Q8IZ16 206 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 DUSP16Q9BY84 665 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 DNAJC18Q9H819 358 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 TAS2R13Q9NYV9 303 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 SUFUQ9UMX1 484 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 CES2O00748 559 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 MTA2O94776 668 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 GUCA1CO95843 209 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 GP5P40197 560 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 TARBP2Q15633 366 aaKnown RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 GRTP1Q5TC63 336 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 SERPINA13PQ6UXR4 307 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 ZNF438Q7Z4V0 828 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 RGL4Q8IZJ4 473 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 HJURPQ8NCD3 748 aaPredicted RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 CATSPER1Q8NEC5 780 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 MED8Q96G25 268 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 THUMPD3Q9BV44 507 aaKnown RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 UNKQ9C0B0 810 aaKnown RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 NCKIPSDQ9NZQ3 722 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 RBPJLQ9UBG7 517 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 DMGDHQ9UI17 866 aaKnown RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 TDRKHQ9Y2W6 561 aaKnown RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 MAFBQ9Y5Q3 323 aaPredicted RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 IGKV6D-41A0A0C4DH26 115 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 GNG14A0A1W2PPG7 69 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 MGAT4DA6NG13 374 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 F8W810 466 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 TLR5O60602 858 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 MPOP05164 745 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 CYP1A2P05177 515 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 GABRR2P28476 465 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 ANXA11P50995 505 aaKnown RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 PARP6Q2NL67 630 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 PPP1R26Q5T8A7 1209 aaPredicted RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 CES3Q6UWW8 571 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 AGGF1Q8N302 714 aaeCLIP14.41□□□□□ -0.1
USP3-204ENST00000540797 SNRNP25Q9BV90 132 aaKnown RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 TRDMT1O14717 391 aaKnown RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 XPO1O14980 1071 aaKnown RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 CCNT2O60583 730 aaKnown RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 CDC25CP30307 473 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 MAGEA9P43362 315 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 RFX3P48380 749 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 THOP1P52888 689 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 KCNMA1Q12791 1236 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 ILF2Q12905 390 aaKnown RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 STX5Q13190 355 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 SLC22A9Q8IVM8 553 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 FAM9CQ8IZT9 166 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 SPPL2BQ8TCT7 592 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 BRI3BPQ8WY22 251 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 SCHIP1Q9P0W5 487 aaPredicted RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 GLI1P08151 1106 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 PECAM1P16284 738 aaPredicted RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 SERPINH1P50454 418 aaKnown RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 CCNG1P51959 295 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 MRPS5P82675 430 aaKnown RBP14.41□□□□□ -0.1
USP3-204ENST00000540797 PLIN5Q00G26 463 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 SLC45A4Q5BKX6 768 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 HOMEZQ8IX15 550 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 C12orf56Q8IXR9 622 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 TLR10Q9BXR5 811 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 RAD54BQ9Y620 910 aa14.41□□□□□ -0.1
USP3-204ENST00000540797 USP12O75317 370 aa14.4□□□□□ -0.1
USP3-204ENST00000540797 SMARCB1Q12824 385 aa14.4□□□□□ -0.1
USP3-204ENST00000540797 KIAA1324Q6UXG2 1013 aaKnown RBP14.4□□□□□ -0.1
USP3-204ENST00000540797 TRPM8Q7Z2W7 1104 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms