RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SLC22A16Q86VW1 577 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 SNX32Q86XE0 403 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ZNF354CQ86Y25 554 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 TPH2Q8IWU9 490 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 TCAIMQ8N3R3 496 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 DEPDC7Q96QD5 511 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 IL12RB2Q99665 862 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 USB1Q9BQ65 265 aaKnown RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 TMEM246Q9BRR3 403 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ADNPQ9H2P0 1102 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 LIN7BQ9HAP6 207 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 CHST12Q9NRB3 414 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ADPRHL2Q9NX46 363 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 GGA1Q9UJY5 639 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 CPSF3Q9UKF6 684 aaKnown RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 PCDHGA10Q9Y5H3 936 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 GSTTP1A0A1W2PQM5 241 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 hCG_1642624A0A1W2PR95 340 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 C12orf71A8MTZ7 269 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 GPAA1O43292 621 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 SCO1O75880 301 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 MFN2O95140 757 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 KCNH1O95259 989 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ASNSP08243 561 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 SNRPAP09012 282 aaKnown RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 PTPN1P18031 435 aaKnown RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 AOC1P19801 751 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 CCNA2P20248 432 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 BGNP21810 368 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 CD9P21926 228 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ATP2B4P23634 1241 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 KLRK1P26718 216 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 MAP4P27816 1152 aaKnown RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 TRPC3Q13507 836 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 TAF5Q15542 800 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 NRF1Q16656 503 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 DPP8Q6V1X1 898 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 PRR23BQ6ZRT6 265 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 FKBP9P1Q75LS8 142 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 CCDC33Q8N5R6 958 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 AADATQ8N5Z0 425 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 SLAIN1Q8ND83 568 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 SIMC1Q8NDZ2 872 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ABHD11Q8NFV4 315 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 TTC17Q96AE7 1141 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 MRRFQ96E11 262 aaKnown RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ZNF560Q96MR9 790 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 C17orf62Q9BQA9 187 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 OSBPL11Q9BXB4 747 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 PARVAQ9NVD7 372 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 POLLQ9UGP5 575 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ATP6V1HQ9UI12 483 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ZNF229Q9UJW7 825 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 BOLA1Q9Y3E2 137 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 EVPLLA8MZ36 301 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 C6orf229H3BNL8 230 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 RNF103O00237 685 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 PLOD2O00469 737 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 VWA5AO00534 786 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 SPAG6O75602 509 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 GGPS1O95749 300 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 CAPNS1P04632 268 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 NCAM1P13591 858 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 PLS3P13797 630 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ZNF26P17031 533 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 SSTR3P32745 418 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 MCAMP43121 646 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ATN1P54259 1190 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 MRPS22P82650 360 aaKnown RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 KCNT1Q5JUK3 1230 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 CNNM4Q6P4Q7 775 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 C11orf96Q7Z7L8 435 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 SIX6OS1Q8N1H7 587 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 FBXW8Q8N3Y1 598 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 LARGE2Q8N3Y3 721 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 CHCHD4Q8N4Q1 142 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 TP53I13Q8NBR0 393 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 CDC26Q8NHZ8 85 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 LHFPL5Q8TAF8 219 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 PKP2Q99959 881 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 SLC4A5Q9BY07 1137 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 COQ3Q9NZJ6 369 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 SUCOQ9UBS9 1254 aaKnown RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ENPP5Q9UJA9 477 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 DNMT3LQ9UJW3 386 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 NUP50Q9UKX7 468 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 RIPK3Q9Y572 518 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ENTPD3O75355 529 aa9.68□□□□□ -0.86
CLIP1-214ENST00000540539 RFPL2O75678 378 aa9.68□□□□□ -0.86
CLIP1-214ENST00000540539 ACTN1P12814 892 aa9.68□□□□□ -0.86
CLIP1-214ENST00000540539 HOXB1P14653 301 aaPredicted RBP9.68□□□□□ -0.86
CLIP1-214ENST00000540539 GSTM2P28161 218 aa9.68□□□□□ -0.86
CLIP1-214ENST00000540539 GYG1P46976 350 aa9.68□□□□□ -0.86
CLIP1-214ENST00000540539 BCAMP50895 628 aa9.68□□□□□ -0.86
CLIP1-214ENST00000540539 GPR85P60893 370 aa9.68□□□□□ -0.86
CLIP1-214ENST00000540539 MRPS15P82914 257 aaKnown RBP9.68□□□□□ -0.86
CLIP1-214ENST00000540539 ZNF33BQ06732 778 aa9.68□□□□□ -0.86
CLIP1-214ENST00000540539 NFE2L1Q14494 772 aa9.68□□□□□ -0.86
CLIP1-214ENST00000540539 FAM171BQ6P995 826 aa9.68□□□□□ -0.86
CLIP1-214ENST00000540539 CORO6Q6QEF8 472 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms