RNA–Protein interactions for RNA: ENST00000538266.5

SNHG1-208, Transcript of small nucleolar RNA host gene 1, human

TSL 3 BASIC

Gene SNHG1, Length 347 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-208	ENST00000538266	SERPINC1	P01008	464 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	HLA-DRA	P01903	254 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	AFP	P02771	609 aa	Known RBP	4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	C4BPA	P04003	597 aa	Known RBP	4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	ASL	P04424	464 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	ITGB1	P05556	798 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	HSD3B2	P26439	372 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	ATIC	P31939	592 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	MC3R	P41968	323 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	FMO5	P49326	533 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	GLUD2	P49448	558 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	JAM2	P57087	298 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	LILRA4	P59901	499 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	MYL6	P60660	151 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	NOP14	P78316	857 aa	Known RBP	4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	CREM	Q03060	361 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	PPP3CA	Q08209	521 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	GPM6B	Q13491	265 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	SMC1A	Q14683	1233 aa	Known RBP	4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	KRT31	Q15323	416 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	NAB2	Q15742	525 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	GPR19	Q15760	415 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	SGSM1	Q2NKQ1	1148 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	USP41	Q3LFD5	358 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	WDR72	Q3MJ13	1102 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	ZACN	Q401N2	412 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	FILIP1L	Q4L180	1135 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	VWA3B	Q502W6	1294 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	ZNF667	Q5HYK9	610 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	FAM171A1	Q5VUB5	890 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	TAF3	Q5VWG9	929 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	PDXDC1	Q6P996	788 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	DSTYK	Q6XUX3	929 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	UBE2R2	Q712K3	238 aa	Predicted RBP	4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	DDX53	Q86TM3	631 aa	Known RBP	4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	TMEM173	Q86WV6	379 aa	Predicted RBP	4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	METTL23	Q86XA0	190 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	DHX40	Q8IX18	779 aa	Known RBP	4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	DRC7	Q8IY82	874 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	FAM26E	Q8N5C1	309 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	SPC24	Q8NBT2	197 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	APPL2	Q8NEU8	664 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	TAS1R2	Q8TE23	839 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	GDPD5	Q8WTR4	605 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	CPA5	Q8WXQ8	436 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	TAF4B	Q92750	862 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	NINJ1	Q92982	152 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	BORCS6	Q96GS4	357 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	MMS19	Q96T76	1030 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	TCF25	Q9BQ70	676 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	PAAF1	Q9BRP4	392 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	TTPAL	Q9BTX7	342 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	LMAN2L	Q9H0V9	348 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	NDST4	Q9H3R1	872 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	ALG13	Q9NP73	1137 aa	Known RBP	4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	MRPL17	Q9NRX2	175 aa	Known RBP	4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	TAB2	Q9NYJ8	693 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	GCNT4	Q9P109	453 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	ASH2L	Q9UBL3	628 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	CBLC	Q9ULV8	474 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	SSX2IP	Q9Y2D8	614 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	PAXBP1	Q9Y5B6	917 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	TNPO3	Q9Y5L0	923 aa	Known RBP	4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	SNX9	Q9Y5X1	595 aa		4.58	□□□□□ -1.68
SNHG1-208	ENST00000538266	COL4A4	P53420	1690 aa	Predicted RBP	4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	DNAH12	Q6ZR08	3092 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	MKI67	P46013	3256 aa	Known RBP	4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	GTPBP10	A4D1E9	387 aa	Known RBP	4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	LGALS16	A8MUM7	142 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266		F8W810	466 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266		H7C4K7	107 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266		I3L4J1	428 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	KIF2A	O00139	706 aa	Predicted RBP	4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	PIR	O00625	290 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	CYB561D2	O14569	222 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	PPEF2	O14830	753 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	SYN3	O14994	580 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	GRM6	O15303	877 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	VNN1	O95497	513 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	ASS1	P00966	412 aa	Known RBP	4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	LTF	P02788	710 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	AMY2A	P04746	511 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	LINC00271	P0C7V0	271 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	ATP1A3	P13637	1013 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	ZNF18	P17022	549 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	AMY2B	P19961	511 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	TBXAS1	P24557	533 aa	Predicted RBP	4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	TKT	P29401	623 aa	Known RBP	4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	IGFALS	P35858	605 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	FLT3	P36888	993 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	BRCC3	P46736	316 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	AARS	P49588	968 aa	Known RBP eCLIP	4.57	□□□□□ -1.68	5e-21	■□□□□ 9.8
SNHG1-208	ENST00000538266	COPB1	P53618	953 aa	Known RBP	4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	GYS2	P54840	703 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	YWHAE	P62258	255 aa	Known RBP	4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	UBXN1	Q04323	297 aa		4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	YWHAH	Q04917	246 aa	Predicted RBP	4.57	□□□□□ -1.68
SNHG1-208	ENST00000538266	GABPB1	Q06547	395 aa	Predicted RBP	4.57	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms