RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 ATE1O95260 518 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 CAPN1P07384 714 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 NMT1P30419 496 aaKnown RBP11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 RALGDSQ12967 914 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 CCNG2Q16589 344 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 GNASQ5JWF2 1037 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 LGSNQ5TDP6 509 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 HSPH1Q92598 858 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 DEFB118Q96PH6 123 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 ANO3Q9BYT9 981 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 BARHL2Q9NY43 387 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 A0A0G2JLL6 359 aaPredicted RBP11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 CLOCKO15516 846 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 NUAK1O60285 661 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 RSL1D1O76021 490 aaKnown RBP11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 CHRNEQ04844 493 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 Q3C1V9 767 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 CCDC58Q4VC31 144 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 CEP55Q53EZ4 464 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 PPP6R3Q5H9R7 873 aaPredicted RBP11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 CATSPERGQ6ZRH7 1159 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 PRRT2Q7Z6L0 340 aaPredicted RBP11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 CHERPQ8IWX8 916 aaKnown RBP11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 ELMOD2Q8IZ81 293 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 S100ZQ8WXG8 99 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 C8orf48Q96LL4 319 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 ZNF641Q96N77 438 aaPredicted RBP11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 ALPK1Q96QP1 1244 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 DHRS9Q9BPW9 319 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 AIFM2Q9BRQ8 373 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 RUBCNLQ9H714 662 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 PCDHGB4Q9UN71 923 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 PCDHGB5Q9Y5G0 923 aa11.14□□□□□ -0.63
CLSTN3-207ENST00000537408 CCDC195A0A1B0GUA6 201 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 LRRN2O75325 713 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 CLPXO76031 633 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 ZNF543Q08ER8 600 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 CHI3L2Q15782 390 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 C6orf10Q5SRN2 563 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 ANKRD26P1Q6NSI1 321 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 DENND5BQ6ZUT9 1274 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 HAUS6Q7Z4H7 955 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 TTC30BQ8N4P2 665 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 ZNF347Q96SE7 839 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 TEKT3Q9BXF9 490 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 CDC14AQ9UNH5 594 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 AFG3L2Q9Y4W6 797 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 ZBBXA8MT70 800 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 DNALI1O14645 258 aaPredicted RBP11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 ALX3O95076 343 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 NCF2P19878 526 aaPredicted RBP11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 M6PRP20645 277 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 PRAMEP78395 509 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 CDKL1Q00532 357 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 TCEAL1Q15170 157 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 FAM160B1Q5W0V3 765 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 PPP4R4Q6NUP7 873 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 GPBP1Q86WP2 473 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 CCDC28AQ8IWP9 274 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 RAVER1Q8IY67 606 aaKnown RBP11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 HACE1Q8IYU2 909 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 AFAP1L2Q8N4X5 818 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 YME1L1Q96TA2 773 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 TRPV6Q9H1D0 765 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 RIC8BQ9NVN3 520 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 TAS2R14Q9NYV8 317 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 PRPF19Q9UMS4 504 aaKnown RBP11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 COL5A3P25940 1745 aaPredicted RBP11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 UBR2Q8IWV8 1755 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 FKBP9O95302 570 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 PTGS2P35354 604 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 GPD2P43304 727 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 BST1Q10588 318 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 MORF4L2Q15014 288 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 CRY1Q16526 586 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 PCSK7Q16549 785 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 RSBN1Q5VWQ0 802 aaPredicted RBP11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 ADGRD1Q6QNK2 874 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 GALNT6Q8NCL4 622 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 SHCBP1Q8NEM2 672 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 ETNPPLQ8TBG4 499 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 PNMA5Q96PV4 448 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 SLC2A11Q9BYW1 496 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 OR2B2Q9GZK3 357 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 TXNDC16Q9P2K2 825 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 STK39Q9UEW8 545 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 GINS2Q9Y248 185 aa11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 CAB39Q9Y376 341 aaPredicted RBP11.13□□□□□ -0.63
CLSTN3-207ENST00000537408 AKR1A1P14550 325 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 NELFEP18615 380 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 RFX1P22670 979 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 GRK2P25098 689 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 MLLT1Q03111 559 aaPredicted RBP11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 MAPRE1Q15691 268 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 ATAD3BQ5T9A4 648 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 MYCT1Q8N699 235 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 OMA1Q96E52 524 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 EFHD1Q9BUP0 239 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 APOL6Q9BWW8 343 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 C12orf10Q9HB07 376 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms