RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 CYLDQ9NQC7 956 aa6.77□□□□□ -1.33
CD44-237ENST00000534082 PRSS16Q9NQE7 514 aa6.77□□□□□ -1.33
CD44-237ENST00000534082 UCKL1Q9NWZ5 548 aa6.77□□□□□ -1.33
CD44-237ENST00000534082 FBXL12Q9NXK8 326 aa6.77□□□□□ -1.33
CD44-237ENST00000534082 SERGEFQ9UGK8 458 aa6.77□□□□□ -1.33
CD44-237ENST00000534082 SIX4Q9UIU6 781 aa6.77□□□□□ -1.33
CD44-237ENST00000534082 COL27A1Q8IZC6 1860 aaPredicted RBP6.77□□□□□ -1.33
CD44-237ENST00000534082 MYH10P35580 1976 aa6.77□□□□□ -1.33
CD44-237ENST00000534082 MYH11P35749 1972 aa6.77□□□□□ -1.33
CD44-237ENST00000534082 CELSR1Q9NYQ6 3014 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 LY6G6EA0A0G2JKS1 128 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 A1L4Q6 167 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 FAM92AA1XBS5 289 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 C10orf142B7Z368 130 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 MDM4O15151 490 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 NOBOXO60393 691 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 GIMD1P0DJR0 217 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 ALPPL2P10696 532 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 FDPSP14324 419 aaKnown RBP6.76□□□□□ -1.33
CD44-237ENST00000534082 TGM2P21980 687 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 DGKAP23743 735 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 CCR5P51681 352 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 RBP5P82980 135 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 KCNAB2Q13303 367 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 ZRSR1Q15695 479 aaKnown RBP6.76□□□□□ -1.33
CD44-237ENST00000534082 TTC38Q5R3I4 469 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 SLFN12LQ6IEE8 588 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 RBM44Q6ZP01 1051 aaKnown RBP6.76□□□□□ -1.33
CD44-237ENST00000534082 C14orf80Q86SX3 495 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 VASH2Q86V25 355 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 IQCHQ86VS3 1027 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 ATCAYQ86WG3 371 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 BRSK2Q8IWQ3 736 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 WDR36Q8NI36 951 aaKnown RBP6.76□□□□□ -1.33
CD44-237ENST00000534082 IFI44Q8TCB0 444 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 CACTINQ8WUQ7 758 aaKnown RBP6.76□□□□□ -1.33
CD44-237ENST00000534082 HTR3CQ8WXA8 447 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 GTF3C6Q969F1 213 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 MIB2Q96AX9 1013 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 ARRDC3Q96B67 414 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 APOLD1Q96LR9 279 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 KCNK16Q96T55 309 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 B3GNT5Q9BYG0 378 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 RAB34Q9BZG1 259 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 MTMR12Q9C0I1 747 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 DPEP3Q9H4B8 488 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 KCND2Q9NZV8 630 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 CLEC4EQ9ULY5 219 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 SCML1Q9UN30 329 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 NME7Q9Y5B8 376 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 CYP46A1Q9Y6A2 500 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 STYXL1Q9Y6J8 313 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 U3KQA8 63 aa6.76□□□□□ -1.33
CD44-237ENST00000534082 CCDC187A0A096LP49 1063 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 A0A1W2PP55 124 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 MID1O15344 667 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 TIMM44O43615 452 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 MAGEC1O60732 1142 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 CDC45O75419 566 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 RNASEH2AO75792 299 aaKnown RBP6.75□□□□□ -1.33
CD44-237ENST00000534082 STC2O76061 302 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 FAM13AO94988 1023 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 CYBBP04839 570 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 FBXO45P0C2W1 286 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 TMEM191BP0C7N4 346 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 LIPCP11150 499 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 PTPN1P18031 435 aaKnown RBP6.75□□□□□ -1.33
CD44-237ENST00000534082 WT1P19544 449 aaPredicted RBP6.75□□□□□ -1.33
CD44-237ENST00000534082 SLC5A2P31639 672 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 ATP5C1P36542 298 aaKnown RBP6.75□□□□□ -1.33
CD44-237ENST00000534082 DCTP40126 519 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 CD97P48960 835 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 ADPRHP54922 357 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 SLC12A3P55017 1021 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 POLE2P56282 527 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 PPP2CBP62714 309 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 PPP2CAP67775 309 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 TRIM29Q14134 588 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 MORC3Q14149 939 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 BMP2KLQ5H9B9 411 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 MANEAQ5SRI9 462 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 FAM35AQ86V20 835 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 JAMLQ86YT9 394 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 SRRM1Q8IYB3 904 aaKnown RBP6.75□□□□□ -1.33
CD44-237ENST00000534082 MYCT1Q8N699 235 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 SYT2Q8N9I0 419 aaPredicted RBP6.75□□□□□ -1.33
CD44-237ENST00000534082 B3GALNT2Q8NCR0 500 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 SSC4DQ8WTU2 575 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 POMGNT1Q8WZA1 660 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 HPDLQ96IR7 371 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 MRPL45Q9BRJ2 306 aaKnown RBP6.75□□□□□ -1.33
CD44-237ENST00000534082 REEP2Q9BRK0 252 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 FAM213AQ9BRX8 229 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 MMTAG2Q9BU76 263 aaKnown RBP6.75□□□□□ -1.33
CD44-237ENST00000534082 RSPH9Q9H1X1 276 aaPredicted RBP6.75□□□□□ -1.33
CD44-237ENST00000534082 NEUROG2Q9H2A3 272 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 IKZF4Q9H2S9 585 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 SNX25Q9H3E2 840 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 USP29Q9HBJ7 922 aa6.75□□□□□ -1.33
CD44-237ENST00000534082 DMAP1Q9NPF5 467 aaPredicted RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms