RNA–Protein interactions for RNA: ENST00000533909.5

CAPN1-227, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-227	ENST00000533909	PRKCI	P41743	596 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	ZNF177	Q13360	481 aa	Predicted RBP	13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	EIF4EBP2	Q13542	120 aa	Predicted RBP	13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	ZNF234	Q14588	700 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	ELF2	Q15723	593 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	OTUD1	Q5VV17	481 aa	Predicted RBP	13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	MBLAC2	Q68D91	279 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	FBXL22	Q6P050	247 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	ZNF571	Q7Z3V5	609 aa	Predicted RBP	13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	C11orf74	Q86VG3	221 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	FAM131B	Q86XD5	332 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	MCOLN2	Q8IZK6	566 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	MDGA1	Q8NFP4	955 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	SORCS1	Q8WY21	1168 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	RUBCN	Q92622	972 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	SYN2	Q92777	582 aa	Predicted RBP	13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	NT5C3B	Q969T7	300 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	TRIM11	Q96F44	468 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	VCPIP1	Q96JH7	1222 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	MCEE	Q96PE7	176 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	PPP1R9B	Q96SB3	815 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	GABRG3	Q99928	467 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	THAP10	Q9P2Z0	257 aa	Predicted RBP	13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	CAPN11	Q9UMQ6	739 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	RAD54B	Q9Y620	910 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	HS3ST4	Q9Y661	456 aa		13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	MYO18A	Q92614	2054 aa	Known RBP	13.82	□□□□□ -0.2
CAPN1-227	ENST00000533909	VPS13A	Q96RL7	3174 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	ZNF292	O60281	2723 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	C2CD4B	A6NLJ0	364 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	SIGLEC16	A6NMB1	481 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	ASL	P04424	464 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	SERPING1	P05155	500 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	EPHX1	P07099	455 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	DLD	P09622	509 aa	Known RBP	13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	RRM1	P23921	792 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	RFC1	P35251	1148 aa	Predicted RBP	13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	GGCX	P38435	758 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	IL12RB1	P42701	662 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	PTPN9	P43378	593 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	GSC	P56915	257 aa	Predicted RBP	13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	LMAN2	Q12907	356 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	PTP4A2	Q12974	167 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	TRIM14	Q14142	442 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	C15orf59	Q2T9L4	293 aa	Predicted RBP	13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	SPECC1L	Q69YQ0	1117 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	LAIR1	Q6GTX8	287 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	RASSF3	Q86WH2	238 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	CIR1	Q86X95	450 aa	Predicted RBP	13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	CCAR2	Q8N163	923 aa	Known RBP	13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	SUMF1	Q8NBK3	374 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	JOSD2	Q8TAC2	188 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	FAM172A	Q8WUF8	416 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	CYB5D2	Q8WUJ1	264 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	MYEOV	Q96EZ4	313 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	PRMT1	Q99873	361 aa	Known RBP	13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	PARVA	Q9NVD7	372 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	ZNHIT6	Q9NWK9	470 aa	Known RBP	13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	ARHGEF38	Q9NXL2	777 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	CALCOCO1	Q9P1Z2	691 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	INVS	Q9Y283	1065 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	ITIH6	Q6UXX5	1313 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	FANCM	Q8IYD8	2048 aa		13.81	□□□□□ -0.2
CAPN1-227	ENST00000533909	OTOGL	Q3ZCN5	2332 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	WASH3P	C4AMC7	463 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	SRGAP2	O75044	1071 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	RTN2	O75298	545 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	CLDN11	O75508	207 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	RHOBTB1	O94844	696 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	FTL	P02792	175 aa	Predicted RBP	13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	GYPC	P04921	128 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	CHRM1	P11229	460 aa	Predicted RBP	13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	GZMA	P12544	262 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	CASP14	P31944	242 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	NNMT	P40261	264 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	CSK	P41240	450 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	ATXN1	P54253	815 aa	Known RBP	13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	SLC12A1	Q13621	1099 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	FUT11	Q495W5	492 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	CCDC14	Q49A88	953 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	PITRM1	Q5JRX3	1037 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	E4F1	Q66K89	784 aa	Predicted RBP	13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	TMEM215	Q68D42	235 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	RNF43	Q68DV7	783 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	TRNP1	Q6NT89	227 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	SCYL2	Q6P3W7	929 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	WDR59	Q6PJI9	974 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	KIAA1324	Q6UXG2	1013 aa	Known RBP	13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	STRADA	Q7RTN6	431 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	ADIPOR2	Q86V24	386 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	WFDC5	Q8TCV5	224 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	ZNF653	Q96CK0	615 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	HAPLN3	Q96S86	360 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	TAS2R14	Q9NYV8	317 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	HCN2	Q9UL51	889 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	SCIN	Q9Y6U3	715 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909	MYO15A	Q9UKN7	3530 aa		13.8	□□□□□ -0.2
CAPN1-227	ENST00000533909		A0A1W2PQF6	199 aa		13.79	□□□□□ -0.2
CAPN1-227	ENST00000533909	MYBL1	P10243	752 aa		13.79	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms