RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-233	ENST00000531141	ZNF804B	A4D1E1	1349 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	C2CD4B	A6NLJ0	364 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	PIP5K1C	O60331	668 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	RFPL3S	P0C7P2	107 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	ST6GAL1	P15907	406 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	HOXA7	P31268	230 aa	Predicted RBP	4.27	□□□□□ -1.73
CD44-233	ENST00000531141	ARL4C	P56559	192 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	RPS13	P62277	151 aa	Known RBP	4.27	□□□□□ -1.73
CD44-233	ENST00000531141	B4GALNT1	Q00973	533 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	DAZAP2	Q15038	168 aa	Predicted RBP	4.27	□□□□□ -1.73
CD44-233	ENST00000531141	ZRSR2	Q15696	482 aa	Known RBP	4.27	□□□□□ -1.73
CD44-233	ENST00000531141	SLC9C1	Q4G0N8	1177 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	DHRS13	Q6UX07	377 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	LDHAL6A	Q6ZMR3	332 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	DEF8	Q6ZN54	512 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	RRAGA	Q7L523	313 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	UBE2Q1	Q7Z7E8	422 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	ENDOV	Q8N8Q3	282 aa	Known RBP	4.27	□□□□□ -1.73
CD44-233	ENST00000531141	FAM47B	Q8NA70	645 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	OR52N4	Q8NGI2	321 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	PIGO	Q8TEQ8	1089 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	GOLGA1	Q92805	767 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	FAM167B	Q9BTA0	163 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	QTRT1	Q9BXR0	403 aa	Known RBP	4.27	□□□□□ -1.73
CD44-233	ENST00000531141	ABHD16B	Q9H3Z7	469 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	TAF1D	Q9H5J8	278 aa	Predicted RBP	4.27	□□□□□ -1.73
CD44-233	ENST00000531141	KIF17	Q9P2E2	1029 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	PCDHGB3	Q9Y5G1	929 aa		4.27	□□□□□ -1.73
CD44-233	ENST00000531141	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	4.26	□□□□□ -1.73
CD44-233	ENST00000531141	SLC22A23	A1A5C7	686 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	FAM90A20P	A6NIJ5	464 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	AGAP5	A6NIR3	686 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141		E7EVH7	732 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	SEPT4	O43236	478 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	ALDOC	P09972	364 aa	Known RBP	4.26	□□□□□ -1.73
CD44-233	ENST00000531141	ACTR2	P61160	394 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	SSBP2	P81877	361 aa	Predicted RBP	4.26	□□□□□ -1.73
CD44-233	ENST00000531141	ID2	Q02363	134 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	EFR3A	Q14156	821 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	MTX3	Q5HYI7	312 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	PAPD7	Q5XG87	772 aa	Known RBP	4.26	□□□□□ -1.73
CD44-233	ENST00000531141	ZNF626	Q68DY1	528 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	LRIG3	Q6UXM1	1119 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	ZNF793	Q6ZN11	406 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	EXOC8	Q8IYI6	725 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	PAQR4	Q8N4S7	273 aa	Predicted RBP	4.26	□□□□□ -1.73
CD44-233	ENST00000531141	CLEC4C	Q8WTT0	213 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	ATP2A3	Q93084	1043 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	VOPP1	Q96AW1	172 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	PDE11A	Q9HCR9	933 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	MLXIPL	Q9NP71	852 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	IPO11	Q9UI26	975 aa	Known RBP	4.26	□□□□□ -1.73
CD44-233	ENST00000531141	KCND3	Q9UK17	655 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	SLC8A2	Q9UPR5	921 aa		4.26	□□□□□ -1.73
CD44-233	ENST00000531141	PLEKHD1	A6NEE1	506 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	KCNU1	A8MYU2	1149 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	MCIDAS	D6RGH6	385 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141		F8W810	466 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	GRM8	O00222	908 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	CYP21A2	P08686	494 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	PEPD	P12955	493 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	CCT5	P48643	541 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	AARS	P49588	968 aa	Known RBP eCLIP	4.25	□□□□□ -1.73
CD44-233	ENST00000531141	PAPOLA	P51003	745 aa	Known RBP	4.25	□□□□□ -1.73
CD44-233	ENST00000531141	SHC2	P98077	582 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	PPFIA1	Q13136	1202 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	PDCL	Q13371	301 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	CUL4B	Q13620	913 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	DCTN1	Q14203	1278 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	ANKRD45	Q5TZF3	282 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	LIPM	Q5VYY2	423 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	SLC2A7	Q6PXP3	512 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	FAM57B	Q71RH2	274 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	RTL10	Q7L3V2	364 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	SYT13	Q7L8C5	426 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	MOGAT3	Q86VF5	341 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	ANKRD18A	Q8IVF6	992 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	PTGR2	Q8N8N7	351 aa	Predicted RBP	4.25	□□□□□ -1.73
CD44-233	ENST00000531141	FSIP1	Q8NA03	581 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	PRSS3P2	Q8NHM4	247 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	TBC1D20	Q96BZ9	403 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	GCC1	Q96CN9	775 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	SCLT1	Q96NL6	688 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	OSBPL5	Q9H0X9	879 aa	Predicted RBP	4.25	□□□□□ -1.73
CD44-233	ENST00000531141	MYH16	Q9H6N6	1097 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	MOV10	Q9HCE1	1003 aa	Known RBP	4.25	□□□□□ -1.73
CD44-233	ENST00000531141	ZNF70	Q9UC06	446 aa	Predicted RBP	4.25	□□□□□ -1.73
CD44-233	ENST00000531141	FEM1B	Q9UK73	627 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	GPR52	Q9Y2T5	361 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	PCDHA10	Q9Y5I2	948 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	DGKB	Q9Y6T7	804 aa		4.25	□□□□□ -1.73
CD44-233	ENST00000531141	TP73	O15350	636 aa		4.24	□□□□□ -1.73
CD44-233	ENST00000531141	CNOT3	O75175	753 aa	Known RBP	4.24	□□□□□ -1.73
CD44-233	ENST00000531141	CTSA	P10619	480 aa		4.24	□□□□□ -1.73
CD44-233	ENST00000531141	HSD3B1	P14060	373 aa		4.24	□□□□□ -1.73
CD44-233	ENST00000531141	STAT1	P42224	750 aa		4.24	□□□□□ -1.73
CD44-233	ENST00000531141	ABCG1	P45844	678 aa		4.24	□□□□□ -1.73
CD44-233	ENST00000531141	ZNF91	Q05481	1191 aa		4.24	□□□□□ -1.73
CD44-233	ENST00000531141	TAF5	Q15542	800 aa		4.24	□□□□□ -1.73
CD44-233	ENST00000531141	GXYLT1	Q4G148	440 aa		4.24	□□□□□ -1.73

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