RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 KLHL40Q2TBA0 621 aa21.32■■□□□ 1
VPS28-206ENST00000526734 NAA35Q5VZE5 725 aa21.32■■□□□ 1
VPS28-206ENST00000526734 LYSMD4Q5XG99 296 aa21.32■■□□□ 1
VPS28-206ENST00000526734 DGLUCYQ7Z3D6 616 aa21.32■■□□□ 1
VPS28-206ENST00000526734 RABEPKQ7Z6M1 372 aa21.32■■□□□ 1
VPS28-206ENST00000526734 WFDC5Q8TCV5 224 aa21.32■■□□□ 1
VPS28-206ENST00000526734 SORCS1Q8WY21 1168 aa21.32■■□□□ 1
VPS28-206ENST00000526734 PRCCQ92733 491 aaPredicted RBP21.32■■□□□ 1
VPS28-206ENST00000526734 PPP1R9BQ96SB3 815 aa21.32■■□□□ 1
VPS28-206ENST00000526734 USP36Q9P275 1121 aaKnown RBP21.32■■□□□ 1
VPS28-206ENST00000526734 SUN2Q9UH99 717 aa21.32■■□□□ 1
VPS28-206ENST00000526734 FRYLO94915 3013 aa21.32■■□□□ 1
VPS28-206ENST00000526734 SYNJ2BP-COX16A0A087WUM0 186 aa21.31■■□□□ 1
VPS28-206ENST00000526734 ZNF165P49910 485 aa21.31■■□□□ 1
VPS28-206ENST00000526734 SF3A2Q15428 464 aaKnown RBP21.31■■□□□ 1
VPS28-206ENST00000526734 SLC25A52Q3SY17 297 aa21.31■■□□□ 1
VPS28-206ENST00000526734 FILIP1LQ4L180 1135 aa21.31■■□□□ 1
VPS28-206ENST00000526734 TMPRSS6Q8IU80 811 aa21.31■■□□□ 1
VPS28-206ENST00000526734 SYT12Q8IV01 421 aa21.31■■□□□ 1
VPS28-206ENST00000526734 OR2T3Q8NH03 318 aa21.31■■□□□ 1
VPS28-206ENST00000526734 SIPA1Q96FS4 1042 aa21.31■■□□□ 1
VPS28-206ENST00000526734 COX16Q9P0S2 106 aa21.31■■□□□ 1
VPS28-206ENST00000526734 EVLQ9UI08 416 aaPredicted RBP21.31■■□□□ 1
VPS28-206ENST00000526734 CYP8B1Q9UNU6 501 aa21.31■■□□□ 1
VPS28-206ENST00000526734 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa21.3■■□□□ 1
VPS28-206ENST00000526734 KHNYNO15037 678 aaKnown RBP21.3■■□□□ 1
VPS28-206ENST00000526734 ACADMP11310 421 aa21.3■■□□□ 1
VPS28-206ENST00000526734 MMP8P22894 467 aa21.3■■□□□ 1
VPS28-206ENST00000526734 OXTRP30559 389 aa21.3■■□□□ 1
VPS28-206ENST00000526734 CXCR3P49682 368 aa21.3■■□□□ 1
VPS28-206ENST00000526734 SULT1E1P49888 294 aa21.3■■□□□ 1
VPS28-206ENST00000526734 FMO1Q01740 532 aa21.3■■□□□ 1
VPS28-206ENST00000526734 ZBTB16Q05516 673 aa21.3■■□□□ 1
VPS28-206ENST00000526734 PTPRNQ16849 979 aa21.3■■□□□ 1
VPS28-206ENST00000526734 PEAR1Q5VY43 1037 aaPredicted RBP21.3■■□□□ 1
VPS28-206ENST00000526734 TMEFF1Q8IYR6 380 aa21.3■■□□□ 1
VPS28-206ENST00000526734 CFAP52Q8N1V2 620 aa21.3■■□□□ 1
VPS28-206ENST00000526734 CYB5D2Q8WUJ1 264 aa21.3■■□□□ 1
VPS28-206ENST00000526734 SLC20A1Q8WUM9 679 aa21.3■■□□□ 1
VPS28-206ENST00000526734 CPA5Q8WXQ8 436 aa21.3■■□□□ 1
VPS28-206ENST00000526734 FOXJ1Q92949 421 aa21.3■■□□□ 1
VPS28-206ENST00000526734 MYEOVQ96EZ4 313 aa21.3■■□□□ 1
VPS28-206ENST00000526734 MKRN2Q9H000 416 aaKnown RBP21.3■■□□□ 1
VPS28-206ENST00000526734 ITM2CQ9NQX7 267 aa21.3■■□□□ 1
VPS28-206ENST00000526734 MYO6Q9UM54 1294 aa21.3■■□□□ 1
VPS28-206ENST00000526734 NDUFS2O75306 463 aa21.29■■□□□ 1
VPS28-206ENST00000526734 IGLV3-19P01714 112 aa21.29■■□□□ 1
VPS28-206ENST00000526734 SRPRAP08240 638 aaKnown RBP21.29■■□□□ 1
VPS28-206ENST00000526734 ATP1A3P13637 1013 aa21.29■■□□□ 1
VPS28-206ENST00000526734 CD6P30203 668 aa21.29■■□□□ 1
VPS28-206ENST00000526734 CSKP41240 450 aa21.29■■□□□ 1
VPS28-206ENST00000526734 COPAP53621 1224 aa21.29■■□□□ 1
VPS28-206ENST00000526734 ATXN1P54253 815 aaKnown RBP21.29■■□□□ 1
VPS28-206ENST00000526734 RNASE9P60153 205 aaKnown RBP21.29■■□□□ 1
VPS28-206ENST00000526734 DEUP1Q05D60 604 aa21.29■■□□□ 1
VPS28-206ENST00000526734 ARID5BQ14865 1188 aa21.29■■□□□ 1
VPS28-206ENST00000526734 CCDC6Q16204 474 aa21.29■■□□□ 1
VPS28-206ENST00000526734 PITRM1Q5JRX3 1037 aa21.29■■□□□ 1
VPS28-206ENST00000526734 OTUD1Q5VV17 481 aaPredicted RBP21.29■■□□□ 1
VPS28-206ENST00000526734 DHX40Q8IX18 779 aaKnown RBP21.29■■□□□ 1
VPS28-206ENST00000526734 CCAR2Q8N163 923 aaKnown RBP21.29■■□□□ 1
VPS28-206ENST00000526734 FRMD1Q8N878 549 aa21.29■■□□□ 1
VPS28-206ENST00000526734 PIGKQ92643 395 aa21.29■■□□□ 1
VPS28-206ENST00000526734 RPRD1AQ96P16 312 aaPredicted RBP21.29■■□□□ 1
VPS28-206ENST00000526734 WDCPQ9H6R7 721 aa21.29■■□□□ 1
VPS28-206ENST00000526734 PIGVQ9NUD9 493 aa21.29■■□□□ 1
VPS28-206ENST00000526734 ARHGEF38Q9NXL2 777 aa21.29■■□□□ 1
VPS28-206ENST00000526734 TMEM59LQ9UK28 342 aa21.29■■□□□ 1
VPS28-206ENST00000526734 MUC22E2RYF6 1773 aaPredicted RBP21.28■■□□□ 1
VPS28-206ENST00000526734 FERP16591 822 aa21.28■■□□□ 1
VPS28-206ENST00000526734 CHRNB2P17787 502 aa21.28■■□□□ 1
VPS28-206ENST00000526734 PTGER3P43115 390 aa21.28■■□□□ 1
VPS28-206ENST00000526734 NSFP46459 744 aaKnown RBP21.28■■□□□ 1
VPS28-206ENST00000526734 GSCP56915 257 aaPredicted RBP21.28■■□□□ 1
VPS28-206ENST00000526734 SULT2A1Q06520 285 aa21.28■■□□□ 1
VPS28-206ENST00000526734 ZNF33AQ06730 810 aa21.28■■□□□ 1
VPS28-206ENST00000526734 AUHQ13825 339 aaKnown RBP21.28■■□□□ 1
VPS28-206ENST00000526734 PLEKHG6Q3KR16 790 aa21.28■■□□□ 1
VPS28-206ENST00000526734 C5orf22Q49AR2 442 aa21.28■■□□□ 1
VPS28-206ENST00000526734 FBXL22Q6P050 247 aa21.28■■□□□ 1
VPS28-206ENST00000526734 CEP76Q8TAP6 659 aa21.28■■□□□ 1
VPS28-206ENST00000526734 PCED1AQ9H1Q7 454 aa21.28■■□□□ 1
VPS28-206ENST00000526734 RTN4Q9NQC3 1192 aaKnown RBP21.28■■□□□ 1
VPS28-206ENST00000526734 INTS6Q9UL03 887 aaKnown RBP21.28■■□□□ 1
VPS28-206ENST00000526734 CKAP5Q14008 2032 aa21.28■■□□□ 1
VPS28-206ENST00000526734 GOLGA8SH3BPF8 625 aa21.27■■□□□ 1
VPS28-206ENST00000526734 PAGE1O75459 146 aa21.27■■□□□ 1
VPS28-206ENST00000526734 CLDN11O75508 207 aa21.27■■□□□ 1
VPS28-206ENST00000526734 HLA-EP13747 358 aa21.27■■□□□ 1
VPS28-206ENST00000526734 FLT3P36888 993 aa21.27■■□□□ 1
VPS28-206ENST00000526734 PLK1P53350 603 aa21.27■■□□□ 1
VPS28-206ENST00000526734 TPM4P67936 248 aa21.27■■□□□ 1
VPS28-206ENST00000526734 CENPCQ03188 943 aa21.27■■□□□ 1
VPS28-206ENST00000526734 FSCBQ5H9T9 825 aa21.27■■□□□ 1
VPS28-206ENST00000526734 SYCP2LQ5T4T6 812 aa21.27■■□□□ 1
VPS28-206ENST00000526734 RNF219Q5W0B1 726 aaPredicted RBP21.27■■□□□ 1
VPS28-206ENST00000526734 IL31Q6EBC2 164 aa21.27■■□□□ 1
VPS28-206ENST00000526734 PPP1R2P3Q6NXS1 205 aa21.27■■□□□ 1
VPS28-206ENST00000526734 MMS22LQ6ZRQ5 1243 aa21.27■■□□□ 1
VPS28-206ENST00000526734 CADM4Q8NFZ8 388 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms