RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	RINL	Q6ZS11	566 aa		5.27	□□□□□ -1.57
CD44-223	ENST00000526553	SLC44A2	Q8IWA5	706 aa	Predicted RBP	5.27	□□□□□ -1.57
CD44-223	ENST00000526553	CACNA2D3	Q8IZS8	1091 aa		5.27	□□□□□ -1.57
CD44-223	ENST00000526553	ARL14EP	Q8N8R7	260 aa	Predicted RBP	5.27	□□□□□ -1.57
CD44-223	ENST00000526553	NRAC	Q8N912	160 aa		5.27	□□□□□ -1.57
CD44-223	ENST00000526553	EXD3	Q8N9H8	876 aa		5.27	□□□□□ -1.57
CD44-223	ENST00000526553	HMGB4	Q8WW32	186 aa		5.27	□□□□□ -1.57
CD44-223	ENST00000526553	ZNF347	Q96SE7	839 aa		5.27	□□□□□ -1.57
CD44-223	ENST00000526553	PIMREG	Q9BSJ6	248 aa		5.27	□□□□□ -1.57
CD44-223	ENST00000526553	PRDM8	Q9NQV8	689 aa		5.27	□□□□□ -1.57
CD44-223	ENST00000526553	LIN7C	Q9NUP9	197 aa	Known RBP	5.27	□□□□□ -1.57
CD44-223	ENST00000526553	DACT1	Q9NYF0	836 aa		5.27	□□□□□ -1.57
CD44-223	ENST00000526553	IPO11	Q9UI26	975 aa	Known RBP	5.27	□□□□□ -1.57
CD44-223	ENST00000526553	AGO2	Q9UKV8	859 aa	Known RBP	5.27	□□□□□ -1.57
CD44-223	ENST00000526553	SLC12A4	Q9UP95	1085 aa		5.27	□□□□□ -1.57
CD44-223	ENST00000526553	COMMD10	Q9Y6G5	202 aa		5.27	□□□□□ -1.57
CD44-223	ENST00000526553	TBC1D3D	A0A087WVF3	549 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TBC1D3I	A0A087WXS9	549 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TBC1D3E	A0A087X179	549 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TBC1D3K	A0A087X1G2	549 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TRBV5-3	A0A0A0MS03	114 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TBC1D3B	A6NDS4	549 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TBC1D3F	A6NER0	549 aa	Predicted RBP	5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TBC1D3L	B9A6J9	549 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TRIM38	O00635	465 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	BMP15	O95972	392 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	IGKV2-30	P06310	120 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TBC1D3H	P0C7X1	549 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	GYS1	P13807	737 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	KRTAP10-11	P60412	298 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	AP2B1	P63010	937 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	SHC2	P98077	582 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	CHAF1A	Q13111	956 aa	Predicted RBP	5.26	□□□□□ -1.57
CD44-223	ENST00000526553	PGM5	Q15124	567 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TBRG1	Q3YBR2	411 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TTC22	Q5TAA0	569 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TBC1D3G	Q6DHY5	549 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TANGO2	Q6ICL3	276 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TBC1D3C	Q6IPX1	549 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	KLHL17	Q6TDP4	642 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	EXOC8	Q8IYI6	725 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	ADGRF4	Q8IZF3	695 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TBC1D3	Q8IZP1	549 aa	Predicted RBP	5.26	□□□□□ -1.57
CD44-223	ENST00000526553		Q8N9P0	234 aa	Predicted RBP	5.26	□□□□□ -1.57
CD44-223	ENST00000526553	SLC44A5	Q8NCS7	719 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	VPS37A	Q8NEZ2	397 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	STT3B	Q8TCJ2	826 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	ATP2A3	Q93084	1043 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	CLMN	Q96JQ2	1002 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	TMEM120A	Q9BXJ8	343 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	PABPC3	Q9H361	631 aa	Known RBP	5.26	□□□□□ -1.57
CD44-223	ENST00000526553	LRFN1	Q9P244	771 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	DAPP1	Q9UN19	280 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	C19orf53	Q9UNZ5	99 aa	Predicted RBP	5.26	□□□□□ -1.57
CD44-223	ENST00000526553	HS3ST3B1	Q9Y662	390 aa		5.26	□□□□□ -1.57
CD44-223	ENST00000526553	KIR2DS5	A0A0G2JLQ3	304 aa		5.25	□□□□□ -1.57
CD44-223	ENST00000526553	KIR2DS3	K7RE56	304 aa		5.25	□□□□□ -1.57
CD44-223	ENST00000526553	PRPF4	O43172	522 aa	Known RBP eCLIP	5.25	□□□□□ -1.57
CD44-223	ENST00000526553	UGDH	O60701	494 aa		5.25	□□□□□ -1.57
CD44-223	ENST00000526553	ALDOC	P09972	364 aa	Known RBP	5.25	□□□□□ -1.57
CD44-223	ENST00000526553	ME1	P48163	572 aa		5.25	□□□□□ -1.57
CD44-223	ENST00000526553	PNLIPRP1	P54315	467 aa		5.25	□□□□□ -1.57
CD44-223	ENST00000526553	HNRNPA0	Q13151	305 aa	Known RBP	5.25	□□□□□ -1.57
CD44-223	ENST00000526553	MIDN	Q504T8	468 aa		5.25	□□□□□ -1.57
CD44-223	ENST00000526553	KIAA1755	Q5JYT7	1200 aa		5.25	□□□□□ -1.57
CD44-223	ENST00000526553	ISM2	Q6H9L7	571 aa		5.25	□□□□□ -1.57
CD44-223	ENST00000526553	LRIG3	Q6UXM1	1119 aa		5.25	□□□□□ -1.57
CD44-223	ENST00000526553	ENAH	Q8N8S7	591 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-223	ENST00000526553	VCPIP1	Q96JH7	1222 aa		5.25	□□□□□ -1.57
CD44-223	ENST00000526553	NPAS1	Q99742	590 aa		5.25	□□□□□ -1.57
CD44-223	ENST00000526553	COPG1	Q9Y678	874 aa	Known RBP	5.25	□□□□□ -1.57
CD44-223	ENST00000526553	LMTK3	Q96Q04	1460 aa		5.25	□□□□□ -1.57
CD44-223	ENST00000526553	WNT1	P04628	370 aa		5.24	□□□□□ -1.57
CD44-223	ENST00000526553	RNASEL	Q05823	741 aa	Known RBP	5.24	□□□□□ -1.57
CD44-223	ENST00000526553	DLGAP5	Q15398	846 aa		5.24	□□□□□ -1.57
CD44-223	ENST00000526553	CCDC38	Q502W7	563 aa		5.24	□□□□□ -1.57
CD44-223	ENST00000526553	CCDC117	Q8IWD4	279 aa	Predicted RBP	5.24	□□□□□ -1.57
CD44-223	ENST00000526553	SCAMP5	Q8TAC9	235 aa		5.24	□□□□□ -1.57
CD44-223	ENST00000526553	SLC2A12	Q8TD20	617 aa		5.24	□□□□□ -1.57
CD44-223	ENST00000526553	CPT1B	Q92523	772 aa		5.24	□□□□□ -1.57
CD44-223	ENST00000526553	OSBPL5	Q9H0X9	879 aa	Predicted RBP	5.24	□□□□□ -1.57
CD44-223	ENST00000526553	MAGEH1	Q9H213	219 aa		5.24	□□□□□ -1.57
CD44-223	ENST00000526553	FOXP1	Q9H334	677 aa	Predicted RBP	5.24	□□□□□ -1.57
CD44-223	ENST00000526553	ELAC1	Q9H777	363 aa	Known RBP	5.24	□□□□□ -1.57
CD44-223	ENST00000526553	TXNRD2	Q9NNW7	524 aa		5.24	□□□□□ -1.57
CD44-223	ENST00000526553	SEMA4B	Q9NPR2	832 aa	Predicted RBP	5.24	□□□□□ -1.57
CD44-223	ENST00000526553	SLC8A2	Q9UPR5	921 aa		5.24	□□□□□ -1.57
CD44-223	ENST00000526553	LZTS1	Q9Y250	596 aa		5.24	□□□□□ -1.57
CD44-223	ENST00000526553	CACNA1I	Q9P0X4	2223 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553		A0A0G2JK05	382 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	TULP3	O75386	442 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	PEPD	P12955	493 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	ADPRH	P54922	357 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	SULT6B1	Q6IMI4	303 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	KRTAP5-3	Q6L8H2	238 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	RTL10	Q7L3V2	364 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	MDGA2	Q7Z553	956 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	IRF2BP2	Q7Z5L9	587 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	DDIAS	Q8IXT1	998 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	MMP21	Q8N119	569 aa		5.23	□□□□□ -1.57

Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms