RNA–Protein interactions for RNA: ENST00000520948.5

VEGFA-222, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,199 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-222	ENST00000520948	SCIN	Q9Y6U3	715 aa		18.8	■□□□□ 0.6
VEGFA-222	ENST00000520948	MYOF	Q9NZM1	2061 aa		18.8	■□□□□ 0.6
VEGFA-222	ENST00000520948	SOWAHD	A6NJG2	315 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	EIF3CL	B5ME19	914 aa	Known RBP	18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948		I6L893	689 aa	Predicted RBP	18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	DCLK1	O15075	740 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	H2AFZ	P0C0S5	128 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	TMEM253	P0C7T8	217 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	GSDMD	P57764	484 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	ATP11A	P98196	1134 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	ZNF252P-AS1	Q0IIN9	211 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	NR1H3	Q13133	447 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	FAM133B	Q5BKY9	247 aa	Known RBP	18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	BRMS1L	Q5PSV4	323 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	TCEAL6	Q6IPX3	200 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	DCUN1D2	Q6PH85	259 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	RAD9B	Q6WBX8	426 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	H2AFV	Q71UI9	128 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	TCEAL3	Q969E4	200 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	BTN2A3P	Q96KV6	586 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	EIF3C	Q99613	913 aa	Known RBP	18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	CNPY3	Q9BT09	278 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	IRX2	Q9BZI1	471 aa	Predicted RBP	18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	TRIM7	Q9C029	511 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	WDCP	Q9H6R7	721 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	ANLN	Q9NQW6	1124 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	XPO7	Q9UIA9	1087 aa	Known RBP	18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	INTU	Q9ULD6	942 aa		18.79	■□□□□ 0.6
VEGFA-222	ENST00000520948	SYNJ2BP-COX16	A0A087WUM0	186 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	GOLGA6L7	A0A1B0GV03	622 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	GOLGA6L6	A8MZA4	724 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	CCP110	O43303	1012 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	NDUFA10	O95299	355 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	SLC6A4	P31645	630 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	RDX	P35241	583 aa	Known RBP	18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	CYLC1	P35663	651 aa	Predicted RBP	18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	MPL	P40238	635 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	SLC11A2	P49281	568 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	LIMK1	P53667	647 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	HDAC4	P56524	1084 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	PLK5	Q496M5	336 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	STPG1	Q5TH74	334 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	CAMKK1	Q8N5S9	505 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	ARFGAP1	Q8N6T3	406 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	ATP6V0D2	Q8N8Y2	350 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	CD101	Q93033	1021 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	PRMT1	Q99873	361 aa	Known RBP	18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	COX16	Q9P0S2	106 aa		18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	MAP1B	P46821	2468 aa	Known RBP	18.78	■□□□□ 0.6
VEGFA-222	ENST00000520948	HOXC11	O43248	304 aa	Predicted RBP	18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	PENK	P01210	267 aa	Predicted RBP	18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	APOE	P02649	317 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	GAD2	Q05329	585 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	MTA1	Q13330	715 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	DMC1	Q14565	340 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	TCEAL1	Q15170	157 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	FBXO43	Q4G163	708 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	PLA2G2C	Q5R387	149 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	ARTN	Q5T4W7	220 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	FYB2	Q5VWT5	728 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	RNF43	Q68DV7	783 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	SND1	Q7KZF4	910 aa	Known RBP eCLIP	18.77	■□□□□ 0.6	4e-9	■■□□□ 11.9
VEGFA-222	ENST00000520948	FAM172A	Q8WUF8	416 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	ZC3H10	Q96K80	434 aa	Known RBP	18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	NUP85	Q9BW27	656 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	DUSP15	Q9H1R2	295 aa	Predicted RBP	18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	SLC12A6	Q9UHW9	1150 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	FBXO10	Q9UK96	956 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	INVS	Q9Y283	1065 aa		18.77	■□□□□ 0.6
VEGFA-222	ENST00000520948	PAGE1	O75459	146 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	APBB3	O95704	486 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	ADH1C	P00326	375 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	ADH5	P11766	374 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	OPRD1	P41143	372 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	MAGEA1	P43355	309 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	CDO1	Q16878	200 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	MS4A13	Q5J8X5	152 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	PIK3R6	Q5UE93	754 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	TPGS1	Q6ZTW0	290 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	SYT13	Q7L8C5	426 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	ETFBKMT	Q8IXQ9	262 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	RNF34	Q969K3	372 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	EXOC4	Q96A65	974 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	MYEOV	Q96EZ4	313 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	PDLIM2	Q96JY6	352 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	C1orf74	Q96LT6	269 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	TKTL2	Q9H0I9	626 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	UVRAG	Q9P2Y5	699 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	REXO2	Q9Y3B8	237 aa	Known RBP	18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	PAXBP1	Q9Y5B6	917 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	PCDHGA5	Q9Y5G8	931 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	PCDHA13	Q9Y5I0	950 aa		18.76	■□□□□ 0.59
VEGFA-222	ENST00000520948	ANTXRL	A6NF34	631 aa		18.75	■□□□□ 0.59
VEGFA-222	ENST00000520948	TM4SF5	O14894	197 aa		18.75	■□□□□ 0.59
VEGFA-222	ENST00000520948	MOCS2	O96007	188 aa	Predicted RBP	18.75	■□□□□ 0.59
VEGFA-222	ENST00000520948	ADRA1B	P35368	520 aa		18.75	■□□□□ 0.59
VEGFA-222	ENST00000520948	DGKE	P52429	567 aa		18.75	■□□□□ 0.59
VEGFA-222	ENST00000520948	SEC13	P55735	322 aa		18.75	■□□□□ 0.59

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