RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 VPS41P49754 854 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 NDST2P52849 883 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 AP1B1Q10567 949 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 CAMK1Q14012 370 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 CASP8Q14790 479 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 SPDYCQ5MJ68 293 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 RABGAP1LQ5R372 815 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 PPIL6Q8IXY8 311 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 RTL3Q8N8U3 475 aaKnown RBP16.46■□□□□ 0.23
NUP54-214ENST00000514307 PKNOX2Q96KN3 472 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 OLFM3Q96PB7 478 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 TSGA13Q96PP4 275 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 VAT1Q99536 393 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 FUT8Q9BYC5 575 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 FRMD8Q9BZ67 464 aaPredicted RBP16.46■□□□□ 0.23
NUP54-214ENST00000514307 RNF38Q9H0F5 515 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 PRDM12Q9H4Q4 367 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 IL21Q9HBE4 155 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 TRPC7Q9HCX4 862 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 ZNF334Q9HCZ1 680 aaPredicted RBP16.46■□□□□ 0.23
NUP54-214ENST00000514307 LSM7Q9UK45 103 aaKnown RBP16.46■□□□□ 0.23
NUP54-214ENST00000514307 YBX2Q9Y2T7 364 aaKnown RBP16.46■□□□□ 0.23
NUP54-214ENST00000514307 SNX10Q9Y5X0 201 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 IGLV3-10A0A075B6K4 115 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 CCL16O15467 120 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 ZSCAN5DPP0CG00 497 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 TACR2P21452 398 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 CCNCP24863 283 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 IRS1P35568 1242 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 KCNQ1P51787 676 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 ITGA8P53708 1063 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 GALNT2Q10471 571 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 ADGRF1Q5T601 910 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 CFAP58Q5T655 872 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 PIK3R6Q5UE93 754 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 PPP2R2DQ66LE6 453 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 RAP1GAP2Q684P5 730 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 PPP1R21Q6ZMI0 780 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 C14orf80Q86SX3 495 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 TMEM150AQ86TG1 271 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 HOOK3Q86VS8 718 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 CHSY1Q86X52 802 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 MREGQ8N565 214 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 FBXO25Q8TCJ0 367 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 RPRD1AQ96P16 312 aaPredicted RBP16.45■□□□□ 0.22
NUP54-214ENST00000514307 CDCA3Q99618 268 aaPredicted RBP16.45■□□□□ 0.22
NUP54-214ENST00000514307 LRRC3Q9BY71 257 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 PBX4Q9BYU1 374 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 KLC2Q9H0B6 622 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 NKX2-4Q9H2Z4 354 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 MAN1C1Q9NR34 630 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 TRHDEQ9UKU6 1024 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 VANGL2Q9ULK5 521 aa16.45■□□□□ 0.22
NUP54-214ENST00000514307 C2orf78A6NCI8 922 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 OPHN1O60890 802 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 STC2O76061 302 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 ETS1P14921 441 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 HSPA9P38646 679 aaKnown RBP16.44■□□□□ 0.22
NUP54-214ENST00000514307 MAPKAPK2P49137 400 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 EPHA5P54756 1037 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 YBEYP58557 167 aaPredicted RBP16.44■□□□□ 0.22
NUP54-214ENST00000514307 SLC7A9P82251 487 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 SARNPP82979 210 aaKnown RBP16.44■□□□□ 0.22
NUP54-214ENST00000514307 SMAD3P84022 425 aaKnown RBP16.44■□□□□ 0.22
NUP54-214ENST00000514307 DHX9Q08211 1270 aaKnown RBP16.44■□□□□ 0.22
NUP54-214ENST00000514307 PRKD1Q15139 912 aaPredicted RBP16.44■□□□□ 0.22
NUP54-214ENST00000514307 C5orf22Q49AR2 442 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 TXNDC8Q6A555 127 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 TIGD7Q6NT04 549 aaPredicted RBP16.44■□□□□ 0.22
NUP54-214ENST00000514307 HIBCHQ6NVY1 386 aaPredicted RBP16.44■□□□□ 0.22
NUP54-214ENST00000514307 FBXL22Q6P050 247 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 ZDHHC24Q6UX98 284 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 ARHGEF18Q6ZSZ5 1173 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 DENND1CQ8IV53 801 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 HS6ST3Q8IZP7 471 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 UMODL1-AS1Q8N2C9 162 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 ARL14EPQ8N8R7 260 aaPredicted RBP16.44■□□□□ 0.22
NUP54-214ENST00000514307 ARNTL2Q8WYA1 636 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 PRMT1Q99873 361 aaKnown RBP16.44■□□□□ 0.22
NUP54-214ENST00000514307 PRKD2Q9BZL6 878 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 C10orf88Q9H8K7 445 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 GKN1Q9NS71 199 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 TMEM248Q9NWD8 314 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 PTPRDP23468 1912 aa16.44■□□□□ 0.22
NUP54-214ENST00000514307 ARHGAP42A6NI28 874 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 MAP2K7O14733 419 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 MFSD11O43934 449 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 ARHGEF15O94989 841 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 OLFM2O95897 454 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 FAM153BP0C7A2 387 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 ECHS1P30084 290 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 CORO1AP31146 461 aaKnown RBP16.43■□□□□ 0.22
NUP54-214ENST00000514307 FDFT1P37268 417 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 PBX2P40425 430 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 GARSP41250 739 aaKnown RBP16.43■□□□□ 0.22
NUP54-214ENST00000514307 PPIDQ08752 370 aaKnown RBP16.43■□□□□ 0.22
NUP54-214ENST00000514307 PARP6Q2NL67 630 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 FAM153CQ494X1 144 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 TTC39BQ5VTQ0 682 aaPredicted RBP16.43■□□□□ 0.22
NUP54-214ENST00000514307 GAREM2Q75VX8 874 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms