RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 NR1H3Q13133 447 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 ALFQ53S48 1182 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 EFHC2Q5JST6 749 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 C10orf76Q5T2E6 689 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 ARTNQ5T4W7 220 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 GRAMD4Q6IC98 578 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 FSTL4Q6MZW2 842 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 Q6ZS52 159 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 TFAP2DQ7Z6R9 452 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 SLFN11Q7Z7L1 901 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 RALGPS2Q86X27 583 aaPredicted RBP10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 RHOT2Q8IXI1 618 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 ZNF683Q8IZ20 524 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 PHTF2Q8N3S3 785 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 KIAA1958Q8N8K9 716 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 NIPA2Q8N8Q9 360 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 CD101Q93033 1021 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 AZIN2Q96A70 460 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 NTAN1Q96AB6 310 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 TMA16Q96EY4 203 aaKnown RBP10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 KCTD15Q96SI1 283 aaPredicted RBP10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 P2RY13Q9BPV8 354 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 DHX35Q9H5Z1 703 aaKnown RBP10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 C8orf33Q9H7E9 229 aaPredicted RBP10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 LUC7LQ9NQ29 371 aaKnown RBP10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 C11orf16Q9NQ32 467 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 ARHGEF4Q9NR80 690 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 USP18Q9UMW8 372 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 NEU3Q9UQ49 428 aa10.12□□□□□ -0.79
TOPBP1-209ENST00000513818 KANSL1LA0AUZ9 987 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 PI15O43692 258 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 LRIG2O94898 1065 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 LUC7L3O95232 432 aaKnown RBP10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 MOCS3O95396 460 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 DCNP07585 359 aaKnown RBP10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 COMTP21964 271 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 CD70P32970 193 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 MARCKSL1P49006 195 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 DGKGP49619 791 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 NAP1L1P55209 391 aaKnown RBP10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 STARD6P59095 220 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 KRT83P78385 493 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 CCDC173Q0VFZ6 552 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 SCAPQ12770 1279 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 CDH18Q13634 790 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 PIGHQ14442 188 aaPredicted RBP10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 GEN1Q17RS7 908 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 ARL13BQ3SXY8 428 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 ATP13A4Q4VNC1 1196 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 PPP6R3Q5H9R7 873 aaPredicted RBP10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 FSCBQ5H9T9 825 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 RABGAP1LQ5R372 815 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 MANEALQ5VSG8 457 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 RWDD4Q6NW29 188 aaKnown RBP10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 ZNF852Q6ZMS4 543 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 MFN1Q8IWA4 741 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 CCDC105Q8IYK2 499 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 CCAR2Q8N163 923 aaKnown RBP10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 NETO2Q8NC67 525 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 OR52K2Q8NGK3 314 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 ERLEC1Q96DZ1 483 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 HAPLN3Q96S86 360 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 DDX50Q9BQ39 737 aaKnown RBP10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 POLR3BQ9NW08 1133 aaPredicted RBP10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 CAPN6Q9Y6Q1 641 aa10.11□□□□□ -0.79
TOPBP1-209ENST00000513818 TYW5A2RUC4 315 aaKnown RBP10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 GRID2IPA4D2P6 1211 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 FAM170BA6NMN3 283 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 PRRT4C9JH25 899 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 H0Y626 953 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 DLL1O00548 723 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 PJA2O43164 708 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 SPOPO43791 374 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 KAT7O95251 611 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 CD48P09326 243 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 RARAP10276 462 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 GOT1P17174 413 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 HLA-FP30511 346 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 MAN1A1P33908 653 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 PCK1P35558 622 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 CSKP41240 450 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 ARHGAP25P42331 645 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 MLLT6P55198 1093 aaPredicted RBP10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 KIF5AQ12840 1032 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 LMAN2Q12907 356 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 TMEM196Q5HYL7 178 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 EMC10Q5UCC4 262 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 CXorf57Q6NSI4 855 aaKnown RBP10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 PKN3Q6P5Z2 889 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 ZNF687Q8N1G0 1237 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 TERB1Q8NA31 727 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 PJA1Q8NG27 643 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 TPCN2Q8NHX9 752 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 SORCS1Q8WY21 1168 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 MSANTD3Q96H12 275 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 XPO6Q96QU8 1125 aaKnown RBP10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 PPP1R9BQ96SB3 815 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 PNKPQ96T60 521 aa10.1□□□□□ -0.79
TOPBP1-209ENST00000513818 LZTFL1Q9NQ48 299 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms