RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	PRDM16	Q9HAZ2	1276 aa		13.75	□□□□□ -0.21
RNF4-215	ENST00000511843	ANLN	Q9NQW6	1124 aa		13.75	□□□□□ -0.21
RNF4-215	ENST00000511843	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
RNF4-215	ENST00000511843	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
RNF4-215	ENST00000511843	TYW5	A2RUC4	315 aa	Known RBP	13.74	□□□□□ -0.21
RNF4-215	ENST00000511843		F5H5T6	163 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843		H0Y626	953 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843		I6L893	689 aa	Predicted RBP	13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	ZBTB24	O43167	697 aa	Predicted RBP	13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	SYNCRIP	O60506	623 aa	Known RBP	13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	PAGE1	O75459	146 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	LUC7L3	O95232	432 aa	Known RBP	13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	LSM8	O95777	96 aa	Known RBP	13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	CAVIN2	O95810	425 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	CYP1A1	P04798	512 aa	Predicted RBP	13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	POLR2E	P19388	210 aa	Known RBP	13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	ABCB4	P21439	1286 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	CCR1	P32246	355 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	CSK	P41240	450 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	COPA	P53621	1224 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	SNX16	P57768	344 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	RAB6C	Q53S08	254 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	FBXL22	Q6P050	247 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	C14orf80	Q86SX3	495 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	APCDD1	Q8J025	514 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	EMC1	Q8N766	993 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	IGSF8	Q969P0	613 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	PCDHB18P	Q96TA0	734 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	BPIFA3	Q9BQP9	254 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	C11orf70	Q9BRQ4	267 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	NAT10	Q9H0A0	1025 aa	Known RBP	13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	SIK2	Q9H0K1	926 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	RAB6C	Q9H0N0	254 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	TMEM245	Q9H330	911 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	METTL5	Q9NRN9	209 aa	Known RBP	13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	VPS45	Q9NRW7	570 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	TMEM74B	Q9NUR3	256 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	DLL3	Q9NYJ7	618 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	PCDHGA5	Q9Y5G8	931 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	HS3ST4	Q9Y661	456 aa		13.74	□□□□□ -0.21
RNF4-215	ENST00000511843	TP53BP1	Q12888	1972 aa	Predicted RBP	13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	DCDC2B	A2VCK2	349 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	PRR5-ARHGAP8	B1AHC4	643 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	TIMM44	O43615	452 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	ADCY5	O95622	1261 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	DLD	P09622	509 aa	Known RBP	13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	SLC2A3	P11169	496 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	ITPKA	P23677	461 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	ZNF165	P49910	485 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	ARHGAP8	P85298	464 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	DEUP1	Q05D60	604 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	BYSL	Q13895	437 aa	Known RBP	13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	PUM1	Q14671	1186 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	PITRM1	Q5JRX3	1037 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	C11orf74	Q86VG3	221 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	TMPRSS6	Q8IU80	811 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	ZDHHC17	Q8IUH5	632 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	CCAR2	Q8N163	923 aa	Known RBP	13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	OR52K2	Q8NGK3	314 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	MYO19	Q96H55	970 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	CFAP57	Q96MR6	1250 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	FSCN3	Q9NQT6	498 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	SEPT11	Q9NVA2	429 aa	Known RBP	13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	SLC12A6	Q9UHW9	1150 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	TMEM59L	Q9UK28	342 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	VANGL2	Q9ULK5	521 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	PLA2G4C	Q9UP65	541 aa		13.73	□□□□□ -0.21
RNF4-215	ENST00000511843	NPC1	O15118	1278 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	ATP5B	P06576	529 aa	Known RBP	13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	PDGFRA	P16234	1089 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	MMP8	P22894	467 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	MZF1	P28698	734 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	ATP11A	P98196	1134 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	CAMK2G	Q13555	558 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	AUH	Q13825	339 aa	Known RBP	13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	IQCB1	Q15051	598 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	KLHL40	Q2TBA0	621 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	DGLUCY	Q7Z3D6	616 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	FAM124A	Q86V42	546 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	ZNF677	Q86XU0	584 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	SLC41A1	Q8IVJ1	513 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	CCDC117	Q8IWD4	279 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	JOSD2	Q8TAC2	188 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	NETO1	Q8TDF5	533 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	SIPA1	Q96FS4	1042 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	RPL10L	Q96L21	214 aa	Known RBP	13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	HSPA12B	Q96MM6	686 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	NAP1L5	Q96NT1	182 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	RPRD1A	Q96P16	312 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	IRX2	Q9BZI1	471 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	TKTL2	Q9H0I9	626 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	RTN4	Q9NQC3	1192 aa	Known RBP	13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	PRSS16	Q9NQE7	514 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	STAP1	Q9ULZ2	295 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	PLXNA2	O75051	1894 aa		13.72	□□□□□ -0.21
RNF4-215	ENST00000511843	DNAH14	Q0VDD8	3507 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	PCDH15	Q96QU1	1955 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	LNP1	A1A4G5	178 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	SMTNL1	A8MU46	457 aa		13.71	□□□□□ -0.21
RNF4-215	ENST00000511843	TTC34	A8MYJ7	566 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms