RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 NUF2Q9BZD4 464 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 IGSF9Q9P2J2 1179 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 K7ERI5 159 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 HMGCRP04035 888 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 PDGFRBP09619 1106 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 PTPN1P18031 435 aaKnown RBP17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 MX2P20592 715 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 DPP6P42658 865 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 ASPAP45381 313 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 ZNF143P52747 638 aaPredicted RBP17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 PKNOX1P55347 436 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 RPS6P62753 249 aaKnown RBP17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 PFKPQ01813 784 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 PRKG1Q13976 671 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 RAB6CQ53S08 254 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 SWSAP1Q6NVH7 229 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 BRSK2Q8IWQ3 736 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 GRIN3AQ8TCU5 1115 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 VPS50Q96JG6 964 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 RAB6CQ9H0N0 254 aa17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 MAP3K20Q9NYL2 800 aaKnown RBP17.52■□□□□ 0.4
SQSTM1-211ENST00000506690 COL11A2P13942 1736 aaPredicted RBP17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 NDST2P52849 883 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 BCAR1P56945 870 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 RAB15P59190 212 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 DPYSQ14117 519 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 C16orf72Q14CZ0 275 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 SCARA5Q6ZMJ2 495 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 GIPC3Q8TF64 312 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 SLX1AQ9BQ83 275 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 OSBPL11Q9BXB4 747 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 OLAHQ9NV23 265 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 MYRFQ9Y2G1 1151 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 ARHGEF37A1IGU5 675 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 APOL1O14791 398 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 XPO1O14980 1071 aaKnown RBP17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 SLC22A2O15244 555 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 MED7O43513 233 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 GCATO75600 419 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 MAP3K6O95382 1288 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 HSPA4LO95757 839 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 CD19P15391 556 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 PROZP22891 400 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 PRKCEQ02156 737 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 GRM1Q13255 1194 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 SPIDRQ14159 915 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 NRF1Q16656 503 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 CCDC153Q494R4 210 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 SLC9A4Q6AI14 798 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 NAPRTQ6XQN6 538 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 EME1Q96AY2 570 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 RCN3Q96D15 328 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 SLC4A5Q9BY07 1137 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 PRDM16Q9HAZ2 1276 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 MTMR10Q9NXD2 777 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 PSAT1Q9Y617 370 aa17.51■□□□□ 0.39
SQSTM1-211ENST00000506690 TCF7P36402 384 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 NAA20P61599 178 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 GSTM4Q03013 218 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 EMC2Q15006 297 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 SMYD5Q6GMV2 418 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 STYK1Q6J9G0 422 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 CPSF7Q8N684 471 aaKnown RBP17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 RNF148Q8N7C7 305 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 LRRN4Q8WUT4 740 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 CDKL2Q92772 493 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 USP13Q92995 863 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 RMDN3Q96TC7 470 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 ACO2Q99798 780 aaKnown RBP17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 CNPY3Q9BT09 278 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 GLIS2Q9BZE0 524 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 PXMP2Q9NR77 195 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 VPS45Q9NRW7 570 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 PNPLA3Q9NST1 481 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 ZNF358Q9NW07 568 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 WDR27A2RRH5 827 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 TMEM114B3SHH9 223 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 NOP56O00567 594 aaKnown RBP17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 BMP10O95393 424 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 TNFSF9P41273 254 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 NAMPTP43490 491 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 NAB1Q13506 487 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 IKBKEQ14164 716 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 BTG3Q14201 252 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 PDK2Q15119 407 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 STILQ15468 1287 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 PDCD4Q53EL6 469 aaKnown RBP17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 PPP6R3Q5H9R7 873 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 SETD3Q86TU7 594 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 CCDC60Q8IWA6 550 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 TDRD5Q8NAT2 981 aaKnown RBP17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 PCDH19Q8TAB3 1148 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 HM13Q8TCT9 377 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 TMEM143Q96AN5 459 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 ZNF385DQ9H6B1 395 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 COQ10BQ9H8M1 238 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 WDR41Q9HAD4 459 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 PFDN4Q9NQP4 134 aa17.5■□□□□ 0.39
SQSTM1-211ENST00000506690 LRRIQ4A6NIV6 560 aa17.49■□□□□ 0.39
SQSTM1-211ENST00000506690 ZNF701M0R085 212 aaPredicted RBP17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms