RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 RFX8Q6ZV50 586 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 BBS12Q6ZW61 710 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 OTOP3Q7RTS5 596 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 C14orf80Q86SX3 495 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 NLRP14Q86W24 1093 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 SLC13A5Q86YT5 568 aaPredicted RBP7.43□□□□□ -1.22
NUP54-204ENST00000506098 MFSD6LQ8IWD5 586 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 PQLC3Q8N755 202 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 PCDH19Q8TAB3 1148 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 MAIP1Q8WWC4 291 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 ELSPBP1Q96BH3 223 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 ACSF2Q96CM8 615 aaPredicted RBP7.43□□□□□ -1.22
NUP54-204ENST00000506098 TBC1D31Q96DN5 1066 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 LRRC3BQ96PB8 259 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 CSPG4P5Q96PW8 444 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 PSMB7Q99436 277 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 NAP1L3Q99457 506 aaPredicted RBP7.43□□□□□ -1.22
NUP54-204ENST00000506098 HERPUD2Q9BSE4 406 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 CALN1Q9BXU9 219 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 SIK2Q9H0K1 926 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 SMG9Q9H0W8 520 aaKnown RBP7.43□□□□□ -1.22
NUP54-204ENST00000506098 CATSPERBQ9H7T0 1116 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 L2HGDHQ9H9P8 463 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 KLHL11Q9NVR0 708 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 ZNF212Q9UDV6 495 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 SNX10Q9Y5X0 201 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 MRFAP1Q9Y605 127 aa7.43□□□□□ -1.22
NUP54-204ENST00000506098 DOCK9Q9BZ29 2069 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 GOLGA6L7A0A1B0GV03 622 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 HEPACAM2A8MVW5 462 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 ANHXE9PGG2 379 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 F5H5T6 163 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 H3BQ06 376 aaPredicted RBP7.42□□□□□ -1.22
NUP54-204ENST00000506098 PGRMC1O00264 195 aaKnown RBP7.42□□□□□ -1.22
NUP54-204ENST00000506098 SLC9A3R1O14745 358 aaPredicted RBP7.42□□□□□ -1.22
NUP54-204ENST00000506098 CREB3O43889 395 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 KIF1CO43896 1103 aaKnown RBP7.42□□□□□ -1.22
NUP54-204ENST00000506098 ECI2O75521 394 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 TJP3O95049 919 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 FGGP02679 453 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 KRT10P13645 584 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 ZFXP17010 805 aaPredicted RBP7.42□□□□□ -1.22
NUP54-204ENST00000506098 RHOQP17081 205 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 ERCC2P18074 760 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 TGM2P21980 687 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 KCNA5P22460 613 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 AMPD1P23109 780 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 GBP2P32456 591 aaPredicted RBP7.42□□□□□ -1.22
NUP54-204ENST00000506098 VIPR2P41587 438 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 NR2C2P49116 596 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 DNA2P51530 1060 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 TPI1P60174 286 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 ADCY2Q08462 1091 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 FCHO2Q0JRZ9 810 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 PAFAH1B3Q15102 231 aaKnown RBP7.42□□□□□ -1.22
NUP54-204ENST00000506098 SMAD2Q15796 467 aaKnown RBP7.42□□□□□ -1.22
NUP54-204ENST00000506098 WHAMMP3Q1A5X7 153 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 PUS10Q3MIT2 529 aaKnown RBP7.42□□□□□ -1.22
NUP54-204ENST00000506098 RABGAP1LQ5R372 815 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 TTC39BQ5VTQ0 682 aaPredicted RBP7.42□□□□□ -1.22
NUP54-204ENST00000506098 RAP1GAP2Q684P5 730 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 TANGO2Q6ICL3 276 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 VITQ6UXI7 678 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 LRRC31Q6UY01 552 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 MTSS1LQ765P7 747 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 CHST9Q7L1S5 443 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 CHSY1Q86X52 802 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 CCDC50Q8IVM0 306 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 BBS7Q8IWZ6 715 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 ZDHHC14Q8IZN3 488 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 ADGRG2Q8IZP9 1017 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 LZTR1Q8N653 840 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 PLD5Q8N7P1 536 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 TTC13Q8NBP0 860 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 BPIFB1Q8TDL5 484 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 OSCP1Q8WVF1 389 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 IGSF8Q969P0 613 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 RSPRY1Q96DX4 576 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 MYEOVQ96EZ4 313 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 MS4A14Q96JA4 679 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 PHF7Q9BWX1 381 aaPredicted RBP7.42□□□□□ -1.22
NUP54-204ENST00000506098 MAK16Q9BXY0 300 aaKnown RBP7.42□□□□□ -1.22
NUP54-204ENST00000506098 ZYG11BQ9C0D3 744 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 KLC2Q9H0B6 622 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 ZFP14Q9HCL3 533 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 ARHGEF4Q9NR80 690 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 TMEM248Q9NWD8 314 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 DONSONQ9NYP3 566 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 FEZ2Q9UHY8 353 aaPredicted RBP7.42□□□□□ -1.22
NUP54-204ENST00000506098 VANGL2Q9ULK5 521 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 RAD54BQ9Y620 910 aa7.42□□□□□ -1.22
NUP54-204ENST00000506098 SCN8AQ9UQD0 1980 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 A0A1B0GVM2 712 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 TCRBV7S2A1N4TA0A589 114 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 TCAF2A6NFQ2 919 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 APOC4-APOC2K7ER74 178 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 PDE2AO00408 941 aaPredicted RBP7.41□□□□□ -1.22
NUP54-204ENST00000506098 APOL1O14791 398 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 CHADO15335 359 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 CST8O60676 142 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms