RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 RCN2Q14257 317 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 GRIK4Q16099 956 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 DBN1Q16643 649 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 KIZQ2M2Z5 673 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 N4BP2L1Q5TBK1 243 aaPredicted RBP16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 C9orf57Q5W0N0 161 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ALKAL1Q6UXT8 129 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 CRYBG2Q8N1P7 616 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ACMSDQ8TDX5 336 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 EMID1Q96A84 441 aaPredicted RBP16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 CLPTM1LQ96KA5 538 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TUT1Q9H6E5 874 aaKnown RBP16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PSAT1Q9Y617 370 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TPP1O14773 563 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MFSD11O43934 449 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MGAT1P26572 445 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 RAB27AP51159 221 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MRPS35P82673 323 aaKnown RBP16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TBC1D25Q3MII6 688 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 STRADAQ7RTN6 431 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 NET1Q7Z628 596 aaPredicted RBP16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ZNF410Q86VK4 478 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SCUBE1Q8IWY4 988 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 STMN2Q93045 179 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PANX3Q96QZ0 392 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SYT15Q9BQS2 421 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TINF2Q9BSI4 451 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 KATNBL1Q9H079 304 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ADAMTS10Q9H324 1103 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 KRT82Q9NSB4 513 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ZNF212Q9UDV6 495 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SPTLC1O15269 473 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PLIN3O60664 434 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 LBX1P52954 281 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SESN2P58004 480 aaPredicted RBP16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TBCCQ15814 346 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 RABGAP1LQ5R372 815 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ZNF618Q5T7W0 954 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 OTUD1Q5VV17 481 aaPredicted RBP16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 CASC4Q6P4E1 433 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 FAM131BQ86XD5 332 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ULK2Q8IYT8 1036 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 BEST2Q8NFU1 509 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 NDRG1Q92597 394 aaKnown RBP16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 RILPQ96NA2 401 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 CDHR5Q9HBB8 845 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 EIF2B3Q9NR50 452 aaKnown RBP16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TMPRSS4Q9NRS4 437 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 DNAJC16Q9Y2G8 782 aa16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 KIAA0100Q14667 2235 aaKnown RBP16.52■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 FKTNO75072 461 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 AOC1P19801 751 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 KCNA4P22459 653 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CPOXP36551 454 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PITX1P78337 314 aaPredicted RBP16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 KLC1Q07866 573 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PCLAFQ15004 111 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SLC27A1Q6PCB7 646 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 RIPOR1Q6ZS17 1223 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 KBTBD2Q8IY47 623 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 UCMAQ8WVF2 138 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 P2RY11Q96G91 374 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 APOL6Q9BWW8 343 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 C1orf21Q9H246 121 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 VTA1Q9NP79 307 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SLC7A8Q9UHI5 535 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 LRCH1Q9Y2L9 728 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 RNF103O00237 685 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PIRO00625 290 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 GLRA3O75311 464 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PGAM1P18669 254 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 MATKP42679 507 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SLC1A6P48664 564 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 TMEM62Q0P6H9 643 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 DNAL1Q4LDG9 190 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 IRGCQ6NXR0 463 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 MAVSQ7Z434 540 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 MYLK4Q86YV6 388 aaPredicted RBP16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 HACE1Q8IYU2 909 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 DEFB106AQ8N104 65 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PIWIL2Q8TC59 973 aaKnown RBP16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 HSFY1Q96LI6 401 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 THTPAQ9BU02 230 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CEP41Q9BYV8 373 aa16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 RCOR3Q9P2K3 495 aaPredicted RBP16.51■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 C6orf222P0C671 652 aaPredicted RBP16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 TKTP29401 623 aaKnown RBP16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ARRB2P32121 409 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 GNL1P36915 607 aaPredicted RBP16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ARL4AP40617 200 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 RGS2P41220 211 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ACADSBP45954 432 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 LBRQ14739 615 aaKnown RBP16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SHKBP1Q8TBC3 707 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SLC2A14Q8TDB8 520 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SORT1Q99523 831 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SIKE1Q9BRV8 207 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms