RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 TRIM21P19474 475 aaKnown RBP17.13■□□□□ 0.33
VIM-208ENST00000497849 SYT1P21579 422 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 SLC8A1P32418 973 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 LSSP48449 732 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 HARS2P49590 506 aaKnown RBP17.13■□□□□ 0.33
VIM-208ENST00000497849 ADPRHP54922 357 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 PPP2CBP62714 309 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 PPP2CAP67775 309 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 SFSWAPQ12872 951 aaKnown RBP17.13■□□□□ 0.33
VIM-208ENST00000497849 ZNF211Q13398 564 aaPredicted RBP17.13■□□□□ 0.33
VIM-208ENST00000497849 KNOP1Q1ED39 458 aaKnown RBP17.13■□□□□ 0.33
VIM-208ENST00000497849 SLC45A4Q5BKX6 768 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 ADGRF1Q5T601 910 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 C9orf64Q5T6V5 341 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 BHLHA9Q7RTU4 235 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 PIGZQ86VD9 579 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 SLC25A45Q8N413 288 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 MFSD2AQ8NA29 543 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 NDRG1Q92597 394 aaKnown RBP17.13■□□□□ 0.33
VIM-208ENST00000497849 TTC17Q96AE7 1141 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 OMDQ99983 421 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 DPH1Q9BZG8 443 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 MORC2Q9Y6X9 1032 aaPredicted RBP17.13■□□□□ 0.33
VIM-208ENST00000497849 DOPEY2Q9Y3R5 2298 aa17.13■□□□□ 0.33
VIM-208ENST00000497849 TDRD6O60522 2096 aaKnown RBP17.12■□□□□ 0.33
VIM-208ENST00000497849 VPS37CA5D8V6 355 aaPredicted RBP17.12■□□□□ 0.33
VIM-208ENST00000497849 USP12O75317 370 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 HLA-DRAP01903 254 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 CD58P19256 250 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 C1orf220Q5T0J3 134 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 FOXD4L5Q5VV16 416 aaPredicted RBP17.12■□□□□ 0.33
VIM-208ENST00000497849 NAPEPLDQ6IQ20 393 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 OR14C36Q8NHC7 312 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 FOXD4L4Q8WXT5 416 aaPredicted RBP17.12■□□□□ 0.33
VIM-208ENST00000497849 VCPIP1Q96JH7 1222 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 FAM129BQ96TA1 746 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 POLR1BQ9H9Y6 1135 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 SLC39A2Q9NP94 309 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 DMAC2Q9NW81 257 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 ARHGAP20Q9P2F6 1191 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 IL17BQ9UHF5 180 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 SFMBT1Q9UHJ3 866 aa17.12■□□□□ 0.33
VIM-208ENST00000497849 INTS6Q9UL03 887 aaKnown RBP17.12■□□□□ 0.33
VIM-208ENST00000497849 HBS1LQ9Y450 684 aaKnown RBP17.12■□□□□ 0.33
VIM-208ENST00000497849 COL27A1Q8IZC6 1860 aaPredicted RBP17.12■□□□□ 0.33
VIM-208ENST00000497849 K7ENP7 123 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 OPA1O60313 960 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 LATS1O95835 1130 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 SLFN14P0C7P3 912 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 GOT1P17174 413 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 CASP1P29466 404 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 DAB2P98082 770 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 ARID5BQ14865 1188 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 SLC39A14Q15043 492 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 PIK3R6Q5UE93 754 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 PM20D1Q6GTS8 502 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 RFWD3Q6PCD5 774 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 INO80CQ6PI98 192 aaPredicted RBP17.11■□□□□ 0.33
VIM-208ENST00000497849 UNC13DQ70J99 1090 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 SND1Q7KZF4 910 aaKnown RBP eCLIP17.11■□□□□ 0.338e-29■□□□□ 8.7
VIM-208ENST00000497849 PRICKLE2Q7Z3G6 844 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 USP28Q96RU2 1077 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 C7orf25Q9BPX7 421 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 UBXN6Q9BZV1 441 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 CYP3A43Q9HB55 503 aa17.11■□□□□ 0.33
VIM-208ENST00000497849 GOLGA6L7A0A1B0GV03 622 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 TTC34A8MYJ7 566 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 TBL1XO60907 577 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 CSO75390 466 aaKnown RBP17.1■□□□□ 0.33
VIM-208ENST00000497849 SLC6A4P31645 630 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 CSKP41240 450 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 PIK3CAP42336 1068 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 PSMD8P48556 350 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 TKTL1P51854 596 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 ST8SIA6P61647 398 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 SKOR1P84550 965 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 AMPD3Q01432 767 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 ZNF394Q53GI3 561 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 MPP7Q5T2T1 576 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 IQCHQ86VS3 1027 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 DEPDC7Q96QD5 511 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 ULBP1Q9BZM6 244 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 TRIM4Q9C037 500 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 CUEDC2Q9H467 287 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 OLA1Q9NTK5 396 aaKnown RBP17.1■□□□□ 0.33
VIM-208ENST00000497849 UCKL1Q9NWZ5 548 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 TPX2Q9ULW0 747 aaKnown RBP17.1■□□□□ 0.33
VIM-208ENST00000497849 MTMR6Q9Y217 621 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 BSNQ9UPA5 3926 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 FLNCQ14315 2725 aa17.1■□□□□ 0.33
VIM-208ENST00000497849 TBC1D3DA0A087WVF3 549 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 TBC1D3IA0A087WXS9 549 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 TBC1D3EA0A087X179 549 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 TBC1D3KA0A087X1G2 549 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 A0A1B0GVM2 712 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 A0A1W2PNU3 283 aaPredicted RBP17.09■□□□□ 0.33
VIM-208ENST00000497849 TARSL2A2RTX5 802 aaKnown RBP17.09■□□□□ 0.33
VIM-208ENST00000497849 TBC1D3FA6NER0 549 aaPredicted RBP17.09■□□□□ 0.33
VIM-208ENST00000497849 TBC1D3LB9A6J9 549 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 MSI1O43347 362 aaKnown RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms