RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 CXorf38Q8TB03 319 aa13.39□□□□□ -0.27
GAPVD1-220ENST00000497580 HERC2P3Q9BVR0 1158 aa13.39□□□□□ -0.27
GAPVD1-220ENST00000497580 SIAEQ9HAT2 523 aa13.39□□□□□ -0.27
GAPVD1-220ENST00000497580 SUN2Q9UH99 717 aa13.39□□□□□ -0.27
GAPVD1-220ENST00000497580 A0A087WXM4 84 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 DYTNA2CJ06 578 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 FAM149AA5PLN7 773 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 PLIN3O60664 434 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 CPA3P15088 417 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 ZNF26P17031 533 aaPredicted RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 MMP8P22894 467 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 TCEA1P23193 301 aaKnown RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 ACAT1P24752 427 aaKnown RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 NPTX2P47972 431 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 ACADVLP49748 655 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 SESN2P58004 480 aaPredicted RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 GTF2BQ00403 316 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 SLC10A5Q5PT55 438 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 TDRD10Q5VZ19 366 aaKnown RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 SCARA3Q6AZY7 606 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 TDRD5Q8NAT2 981 aaKnown RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 KCNN1Q92952 543 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 MTG1Q9BT17 334 aaPredicted RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 OSBPL11Q9BXB4 747 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 TPK1Q9H3S4 243 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 HIPK3Q9H422 1215 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 TDRD3Q9H7E2 651 aaKnown RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 GIN1Q9NXP7 522 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 NR2E3Q9Y5X4 410 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 SQORQ9Y6N5 450 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 DDX60LQ5H9U9 1706 aaKnown RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 H3BMQ9 156 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 VAPBO95292 243 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 CALB1P05937 261 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 KRT3P12035 628 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 JAK1P23458 1154 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 QARSP47897 775 aaKnown RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 EN1Q05925 392 aaPredicted RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 FSTL1Q12841 308 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 ZC3H7AQ8IWR0 971 aaKnown RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 ALDH16A1Q8IZ83 802 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 STARD8Q92502 1023 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 COG8Q96MW5 612 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 DHX35Q9H5Z1 703 aaKnown RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 GPATCH2LQ9NWQ4 482 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 DNAJC28Q9NX36 388 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 EMCNQ9ULC0 261 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 TOGARAM1Q9Y4F4 1720 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 RNF103-CHMP3A0A140T963 221 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 LRCH4O75427 683 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 MPSTP25325 297 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 RBL1P28749 1068 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 DPP6P42658 865 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 TRPC3Q13507 836 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 MAPK11Q15759 364 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 ANO4Q32M45 955 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 ZBED5Q49AG3 693 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 NIPAL1Q6NVV3 410 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 SIX6OS1Q8N1H7 587 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 RPF2Q9H7B2 306 aaKnown RBP13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 PCDH12Q9NPG4 1184 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 FBXO28Q9NVF7 368 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 ATAD3AQ9NVI7 634 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 CROTQ9UKG9 612 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 DGKBQ9Y6T7 804 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 SCN7AQ01118 1682 aa13.38□□□□□ -0.27
GAPVD1-220ENST00000497580 KRBA1A5PL33 1030 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 ZNF839A8K0R7 811 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 GLRA3O75311 464 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 ATP2B4P23634 1241 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 TCF7P36402 384 aaPredicted RBP13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 PMS2P3Q13401 168 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 PGS1Q32NB8 556 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 WDR78Q5VTH9 848 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 SNRNP48Q6IEG0 339 aaKnown RBP13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 TICAM1Q8IUC6 712 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 NAT16Q8N8M0 369 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 Q8N9G6 341 aaPredicted RBP13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 SLC2A11Q9BYW1 496 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 CCDC68Q9H2F9 335 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 VPS45Q9NRW7 570 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 SFMBT1Q9UHJ3 866 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 TRPC5Q9UL62 973 aaPredicted RBP13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 PADI4Q9UM07 663 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 GIT1Q9Y2X7 761 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 PAPPAQ13219 1627 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 KRT7P08729 469 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 EEF1DP29692 281 aaKnown RBP13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 LIG4P49917 911 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 NKX2-5P52952 324 aaPredicted RBP13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 LRRC8EQ6NSJ5 796 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 HERC6Q8IVU3 1022 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 C12orf56Q8IXR9 622 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 TMEM102Q8N9M5 508 aaPredicted RBP13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 TMEM35BQ8NCS4 154 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 DCAF4Q8WV16 495 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 PGLYRP2Q96PD5 576 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 MXRA8Q9BRK3 442 aa13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 FRMD8Q9BZ67 464 aaPredicted RBP13.37□□□□□ -0.27
GAPVD1-220ENST00000497580 PRPF19Q9UMS4 504 aaKnown RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms