RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ZC3H7BQ9UGR2 993 aaKnown RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 SLC24A2Q9UI40 661 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 FARP1Q9Y4F1 1045 aaPredicted RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 USP3Q9Y6I4 520 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 RNF103O00237 685 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 GCATO75600 419 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 MT-ND3P03897 115 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 CCNCP24863 283 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 RBL1P28749 1068 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 PAFAH1B3Q15102 231 aaKnown RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 ARMC3Q5W041 872 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 KREMEN2Q8NCW0 462 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 SRPK1Q96SB4 655 aaKnown RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 ETNK2Q9NVF9 386 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 PSMC3IPQ9P2W1 217 aaPredicted RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 SDR42E2A6NKP2 422 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 ACSL4O60488 711 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 GJB5O95377 273 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 POLBP06746 335 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 MLNP12872 115 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 PTPN2P17706 415 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 MAPK8P45983 427 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 MMRN1Q13201 1228 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 KLF1Q13351 362 aaPredicted RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 POLD3Q15054 466 aaPredicted RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 TMED2Q15363 201 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 RETSATQ6NUM9 610 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 NLRP9Q7RTR0 991 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 CALML6Q8TD86 181 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 HDAC7Q8WUI4 952 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 STAMBPL1Q96FJ0 436 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 KIF9Q9HAQ2 790 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 EIF2B3Q9NR50 452 aaKnown RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 TLR9Q9NR96 1032 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 MARCH5Q9NX47 278 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 TBC1D14Q9P2M4 693 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 INSL5Q9Y5Q6 135 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 CITO14578 2027 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 HNRNPA1P09651 372 aaKnown RBP eCLIP8.59□□□□□ -1.03
USP54-215ENST00000497106 HDCP19113 662 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 CNTFP26441 200 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 EPHB1P54762 984 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 RTP2Q5QGT7 225 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 MARC1Q5VT66 337 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 SDHAF4Q5VUM1 108 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 RNF19BQ6ZMZ0 732 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 TCEAL8Q8IYN2 117 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 RTL3Q8N8U3 475 aaKnown RBP8.59□□□□□ -1.03
USP54-215ENST00000497106 ANKS4BQ8N8V4 417 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 MCUQ8NE86 351 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 PABPC5Q96DU9 382 aaKnown RBP8.59□□□□□ -1.03
USP54-215ENST00000497106 TGS1Q96RS0 853 aaKnown RBP8.59□□□□□ -1.03
USP54-215ENST00000497106 CAPS2Q9BXY5 557 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.59□□□□□ -1.03
USP54-215ENST00000497106 MRPL42Q9Y6G3 142 aaKnown RBP8.59□□□□□ -1.03
USP54-215ENST00000497106 E9PAM4 449 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 MAP2K7O14733 419 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 RPL22P35268 128 aaKnown RBP8.59□□□□□ -1.03
USP54-215ENST00000497106 BMPR1AP36894 532 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 CDH4P55283 916 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 IL9RQ01113 521 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 NRG1Q02297 640 aaPredicted RBP8.59□□□□□ -1.03
USP54-215ENST00000497106 ZNF252P-AS1Q0IIN9 211 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 ASPHQ12797 758 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 MRPL58Q14197 206 aaKnown RBP8.59□□□□□ -1.03
USP54-215ENST00000497106 ANKRD20A2Q5SQ80 823 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 ANKRD20A1Q5TYW2 823 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 ANKRD20A3Q5VUR7 823 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 PLPP4Q5VZY2 271 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 KLHDC10Q6PID8 442 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 PCDH19Q8TAB3 1148 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 THG1LQ9NWX6 298 aaKnown RBP8.59□□□□□ -1.03
USP54-215ENST00000497106 SEPT3Q9UH03 358 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 GOLGA8MH3BSY2 632 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 FANCGO15287 622 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 TACR2P21452 398 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 OR1E1P30953 314 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 CAP1Q01518 475 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 CDH17Q12864 832 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 DAB2IPQ5VWQ8 1189 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 SYPL2Q5VXT5 272 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 SCARA3Q6AZY7 606 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 CCDC63Q8NA47 563 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 HERVK_113Q902F9 699 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 TRMT2BQ96GJ1 504 aaKnown RBP8.59□□□□□ -1.03
USP54-215ENST00000497106 ZIM3Q96PE6 472 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 MYCBPQ99417 103 aaPredicted RBP8.59□□□□□ -1.03
USP54-215ENST00000497106 PRKD2Q9BZL6 878 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 CCDC68Q9H2F9 335 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 CDC42EP4Q9H3Q1 356 aaKnown RBP8.59□□□□□ -1.03
USP54-215ENST00000497106 ARHGEF38Q9NXL2 777 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 SFMBT1Q9UHJ3 866 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 SMG5Q9UPR3 1016 aaKnown RBP8.59□□□□□ -1.03
USP54-215ENST00000497106 RALGAPA2Q2PPJ7 1873 aa8.59□□□□□ -1.03
USP54-215ENST00000497106 ZBTB24O43167 697 aaPredicted RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 TBC1D4O60343 1298 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 C8AP07357 584 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 NUDT17P0C025 328 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 GABRR2P28476 465 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 RAP1GAP2Q684P5 730 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms