RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 PAFAH1B3Q15102 231 aaKnown RBP11.75□□□□□ -0.53
MCF2L-231ENST00000494043 CYP1B1Q16678 543 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 FAM78AQ5JUQ0 283 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 HABP4Q5JVS0 413 aaKnown RBP11.75□□□□□ -0.53
MCF2L-231ENST00000494043 RABGAP1LQ5R372 815 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 RFWD3Q6PCD5 774 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 C1orf228Q6PIY5 440 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 TMCO3Q6UWJ1 677 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 NPNTQ6UXI9 565 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 BBS7Q8IWZ6 715 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 CELF5Q8N6W0 485 aaKnown RBP11.75□□□□□ -0.53
MCF2L-231ENST00000494043 RTL3Q8N8U3 475 aaKnown RBP11.75□□□□□ -0.53
MCF2L-231ENST00000494043 TTC16Q8NEE8 873 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 ACTL9Q8TC94 416 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 C1orf54Q8WWF1 131 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 ATG4AQ8WYN0 398 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 P3H4Q92791 437 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 SMARCD2Q92925 531 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 IGSF8Q969P0 613 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 MYEOVQ96EZ4 313 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 PRICKLE1Q96MT3 831 aaPredicted RBP11.75□□□□□ -0.53
MCF2L-231ENST00000494043 ASB16Q96NS5 453 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 GUCD1Q96NT3 240 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 NECTIN4Q96NY8 510 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 RPRD1AQ96P16 312 aaPredicted RBP11.75□□□□□ -0.53
MCF2L-231ENST00000494043 FRMD8P1Q9BZ68 369 aaPredicted RBP11.75□□□□□ -0.53
MCF2L-231ENST00000494043 ZYG11BQ9C0D3 744 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 HOMER3Q9NSC5 361 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 MPP6Q9NZW5 540 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 SAE1Q9UBE0 346 aaPredicted RBP11.75□□□□□ -0.53
MCF2L-231ENST00000494043 CD207Q9UJ71 328 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 CDH7Q9ULB5 785 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 MFHAS1Q9Y4C4 1052 aa11.75□□□□□ -0.53
MCF2L-231ENST00000494043 LIASO43766 372 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 FOSL2P15408 326 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 SERPINB6P35237 376 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 NR2C2P49116 596 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 FNTAP49354 379 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 OTUD4Q01804 1114 aaKnown RBP11.74□□□□□ -0.53
MCF2L-231ENST00000494043 GBE1Q04446 702 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 NOMO1Q15155 1222 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 CCNG2Q16589 344 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 ALFQ53S48 1182 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 TTC39BQ5VTQ0 682 aaPredicted RBP11.74□□□□□ -0.53
MCF2L-231ENST00000494043 NLRP14Q86W24 1093 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 CPXM2Q8N436 756 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 MMGT1Q8N4V1 131 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 DEFB123Q8N688 67 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 KIAA1958Q8N8K9 716 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 NOA1Q8NC60 698 aaKnown RBP11.74□□□□□ -0.53
MCF2L-231ENST00000494043 SUSD6Q92537 303 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 MAGOHBQ96A72 148 aaKnown RBP11.74□□□□□ -0.53
MCF2L-231ENST00000494043 MYADMQ96S97 322 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 FAM118BQ9BPY3 351 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 DDX47Q9H0S4 455 aaKnown RBP11.74□□□□□ -0.53
MCF2L-231ENST00000494043 POMKQ9H5K3 350 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 LRRC19Q9H756 370 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 TRPV4Q9HBA0 871 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 TMEM248Q9NWD8 314 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 USP15Q9Y4E8 981 aaPredicted RBP11.74□□□□□ -0.53
MCF2L-231ENST00000494043 HEY1Q9Y5J3 304 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 DENND4AQ7Z401 1863 aa11.74□□□□□ -0.53
MCF2L-231ENST00000494043 H3BQ06 376 aaPredicted RBP11.73□□□□□ -0.53
MCF2L-231ENST00000494043 TRDMT1O14717 391 aaKnown RBP11.73□□□□□ -0.53
MCF2L-231ENST00000494043 MCF2LO15068 1137 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 CNTN5O94779 1100 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 FCARP24071 287 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 CHRNA3P32297 505 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 CHKAP35790 457 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 COILP38432 576 aaPredicted RBP11.73□□□□□ -0.53
MCF2L-231ENST00000494043 VIPR2P41587 438 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 MAPKAPK2P49137 400 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 SGSHP51688 502 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 VCPP55072 806 aaKnown RBP11.73□□□□□ -0.53
MCF2L-231ENST00000494043 RPS24P62847 133 aaKnown RBP11.73□□□□□ -0.53
MCF2L-231ENST00000494043 SLC10A2Q12908 348 aaPredicted RBP11.73□□□□□ -0.53
MCF2L-231ENST00000494043 SNX1Q13596 522 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 CCDC85BQ15834 202 aaPredicted RBP11.73□□□□□ -0.53
MCF2L-231ENST00000494043 TTC27Q6P3X3 843 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 DRICH1Q6PGQ1 229 aaPredicted RBP11.73□□□□□ -0.53
MCF2L-231ENST00000494043 CHST9Q7L1S5 443 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 TFAP2DQ7Z6R9 452 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 CIR1Q86X95 450 aaPredicted RBP11.73□□□□□ -0.53
MCF2L-231ENST00000494043 KLHL7Q8IXQ5 586 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 LZTR1Q8N653 840 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 NPWQ8N729 165 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 HJURPQ8NCD3 748 aaPredicted RBP11.73□□□□□ -0.53
MCF2L-231ENST00000494043 SLC35B2Q8TB61 432 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 NKD2Q969F2 451 aaPredicted RBP11.73□□□□□ -0.53
MCF2L-231ENST00000494043 RSPRY1Q96DX4 576 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 RUNDC3BQ96NL0 473 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 OLFM3Q96PB7 478 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 KRT12Q99456 494 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 KLC2Q9H0B6 622 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 RETREG1Q9H6L5 497 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 UBE2ZQ9H832 354 aaPredicted RBP11.73□□□□□ -0.53
MCF2L-231ENST00000494043 OBP2AQ9NY56 170 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 DONSONQ9NYP3 566 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 DTLQ9NZJ0 730 aa11.73□□□□□ -0.53
MCF2L-231ENST00000494043 TBC1D14Q9P2M4 693 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms