RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 CEACAM1P13688 526 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 HOXB3P14651 431 aaPredicted RBP9.23□□□□□ -0.93
HDAC3-211ENST00000491581 CSRP1P21291 193 aaKnown RBP9.23□□□□□ -0.93
HDAC3-211ENST00000491581 TACR2P21452 398 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 CLCN1P35523 988 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 RPL34P49207 117 aaKnown RBP9.23□□□□□ -0.93
HDAC3-211ENST00000491581 SHC2P98077 582 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 KCNMA1Q12791 1236 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 PDCLQ13371 301 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 BYSLQ13895 437 aaKnown RBP9.23□□□□□ -0.93
HDAC3-211ENST00000491581 PITRM1Q5JRX3 1037 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 TRNP1Q6NT89 227 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 UNQ6494/PRO21346Q6UXR6 183 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 SLCO6A1Q86UG4 719 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 CHSY1Q86X52 802 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 SCML4Q8N228 414 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.23□□□□□ -0.93
HDAC3-211ENST00000491581 UCMAQ8WVF2 138 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 DNASE2BQ8WZ79 361 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 IRGQQ8WZA9 623 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 GATA6Q92908 595 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 IGSF8Q969P0 613 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 SLC2A11Q9BYW1 496 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 MAGEB5Q9BZ81 275 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 DNAI2Q9GZS0 605 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 LHX5Q9H2C1 402 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 RWDD2AQ9UIY3 292 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 HOOK1Q9UJC3 728 aaKnown RBP9.23□□□□□ -0.93
HDAC3-211ENST00000491581 KIAA1257Q9ULG3 409 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 SNX11Q9Y5W9 270 aa9.23□□□□□ -0.93
HDAC3-211ENST00000491581 A0A1W2PP55 124 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 BICDL2A1A5D9 508 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 FOXN3O00409 490 aaPredicted RBP9.22□□□□□ -0.93
HDAC3-211ENST00000491581 CAPN9O14815 690 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 P4HA2O15460 535 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 ZBTB24O43167 697 aaPredicted RBP9.22□□□□□ -0.93
HDAC3-211ENST00000491581 LUC7L3O95232 432 aaKnown RBP9.22□□□□□ -0.93
HDAC3-211ENST00000491581 GJB6O95452 261 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 WNT1P04628 370 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 IGHV4-34P06331 123 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 DLDP09622 509 aaKnown RBP9.22□□□□□ -0.93
HDAC3-211ENST00000491581 ACADMP11310 421 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 PDGFRAP16234 1089 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 POLR2EP19388 210 aaKnown RBP9.22□□□□□ -0.93
HDAC3-211ENST00000491581 PSMD8P48556 350 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 SLC11A2P49281 568 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 NME3Q13232 169 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 KCNJ12Q14500 433 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 EIF4HQ15056 248 aaKnown RBP9.22□□□□□ -0.93
HDAC3-211ENST00000491581 KIF19Q2TAC6 998 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 HLA-BQ31612 363 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 PTPN20Q4JDL3 420 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 CCDC157Q569K6 752 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 MIIPQ5JXC2 388 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 SPDYCQ5MJ68 293 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 C9orf64Q5T6V5 341 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 TAF3Q5VWG9 929 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 MMAAQ8IVH4 418 aaKnown RBP9.22□□□□□ -0.93
HDAC3-211ENST00000491581 NAXDQ8IW45 347 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 ELOA2Q8IYF1 753 aaPredicted RBP9.22□□□□□ -0.93
HDAC3-211ENST00000491581 AHI1Q8N157 1196 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 STK40Q8N2I9 435 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 HDDC3Q8N4P3 179 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 AADATQ8N5Z0 425 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 HSFY1Q96LI6 401 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 SLC6A18Q96N87 628 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 PRMT1Q99873 361 aaKnown RBP9.22□□□□□ -0.93
HDAC3-211ENST00000491581 NEUROG2Q9H2A3 272 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 GAREM1Q9H706 876 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 TM9SF3Q9HD45 589 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 SAMSN1Q9NSI8 373 aaKnown RBP9.22□□□□□ -0.93
HDAC3-211ENST00000491581 DNAAF2Q9NVR5 837 aaKnown RBP9.22□□□□□ -0.93
HDAC3-211ENST00000491581 DNAJC12Q9UKB3 198 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 ERVW-1Q9UQF0 538 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 TLR6Q9Y2C9 796 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 CA5BQ9Y2D0 317 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.22□□□□□ -0.93
HDAC3-211ENST00000491581 FHOD1Q9Y613 1164 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 ACTL7AQ9Y615 435 aa9.22□□□□□ -0.93
HDAC3-211ENST00000491581 USP24Q9UPU5 2620 aa9.21□□□□□ -0.93
HDAC3-211ENST00000491581 A0A1B0GTW7 788 aa9.21□□□□□ -0.94
HDAC3-211ENST00000491581 FAM149AA5PLN7 773 aa9.21□□□□□ -0.94
HDAC3-211ENST00000491581 H0Y626 953 aa9.21□□□□□ -0.94
HDAC3-211ENST00000491581 TAF4O00268 1085 aa9.21□□□□□ -0.94
HDAC3-211ENST00000491581 BCAT2O15382 392 aaPredicted RBP9.21□□□□□ -0.94
HDAC3-211ENST00000491581 CNTN5O94779 1100 aa9.21□□□□□ -0.94
HDAC3-211ENST00000491581 SEMA4FO95754 770 aa9.21□□□□□ -0.94
HDAC3-211ENST00000491581 IGLV3-19P01714 112 aa9.21□□□□□ -0.94
HDAC3-211ENST00000491581 PROS1P07225 676 aa9.21□□□□□ -0.94
HDAC3-211ENST00000491581 ATXN1LP0C7T5 689 aaKnown RBP9.21□□□□□ -0.94
HDAC3-211ENST00000491581 GLDCP23378 1020 aa9.21□□□□□ -0.94
HDAC3-211ENST00000491581 MTIF2P46199 727 aaKnown RBP9.21□□□□□ -0.94
HDAC3-211ENST00000491581 RNASE9P60153 205 aaKnown RBP9.21□□□□□ -0.94
HDAC3-211ENST00000491581 PPP2CBP62714 309 aa9.21□□□□□ -0.94
HDAC3-211ENST00000491581 YWHAZP63104 245 aaKnown RBP9.21□□□□□ -0.94
HDAC3-211ENST00000491581 PPP2CAP67775 309 aa9.21□□□□□ -0.94
HDAC3-211ENST00000491581 RING1Q06587 406 aa9.21□□□□□ -0.94
HDAC3-211ENST00000491581 EIF4EBP2Q13542 120 aaPredicted RBP9.21□□□□□ -0.94
HDAC3-211ENST00000491581 CDH18Q13634 790 aa9.21□□□□□ -0.94
HDAC3-211ENST00000491581 ARTNQ5T4W7 220 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms