RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 RNF43Q68DV7 783 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 CHST9Q7L1S5 443 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 ANKS1BQ7Z6G8 1248 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 C14orf80Q86SX3 495 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 PSTKQ8IV42 348 aaKnown RBP11.22□□□□□ -0.61
VPS13D-210ENST00000489961 ZNF687Q8N1G0 1237 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 PHTF2Q8N3S3 785 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 SYNPOQ8N3V7 929 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 ARFGAP1Q8N6T3 406 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 ACRBPQ8NEB7 543 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 FIBINQ8TAL6 211 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 WFIKKN2Q8TEU8 576 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 IGSF8Q969P0 613 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 CLDN23Q96B33 292 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 P2RY11Q96G91 374 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 CALR3Q96L12 384 aaKnown RBP11.22□□□□□ -0.61
VPS13D-210ENST00000489961 EPAS1Q99814 870 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 SNRNP25Q9BV90 132 aaKnown RBP11.22□□□□□ -0.61
VPS13D-210ENST00000489961 FBRSL1Q9HCM7 1045 aaKnown RBP11.22□□□□□ -0.61
VPS13D-210ENST00000489961 PPARGC1AQ9UBK2 798 aaKnown RBP11.22□□□□□ -0.61
VPS13D-210ENST00000489961 AP4E1Q9UPM8 1137 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 SLC27A6Q9Y2P4 619 aa11.22□□□□□ -0.61
VPS13D-210ENST00000489961 REXO2Q9Y3B8 237 aaKnown RBP11.22□□□□□ -0.61
VPS13D-210ENST00000489961 F5P12259 2224 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 DOCK4Q8N1I0 1966 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 VCANP13611 3396 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 IGLV3-10A0A075B6K4 115 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 A0A0A0MRY4 1105 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 DRGXA6NNA5 263 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 TRIM24O15164 1050 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 PI15O43692 258 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 DCNP07585 359 aaKnown RBP11.21□□□□□ -0.61
VPS13D-210ENST00000489961 PABPC1P11940 636 aaKnown RBP11.21□□□□□ -0.61
VPS13D-210ENST00000489961 L1CAMP32004 1257 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 HADHBP55084 474 aaKnown RBP11.21□□□□□ -0.61
VPS13D-210ENST00000489961 CDH4P55283 916 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 KIF5AQ12840 1032 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 E2F5Q15329 346 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 BOLA3Q53S33 107 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 RWDD4Q6NW29 188 aaKnown RBP11.21□□□□□ -0.61
VPS13D-210ENST00000489961 CIR1Q86X95 450 aaPredicted RBP11.21□□□□□ -0.61
VPS13D-210ENST00000489961 ZNF683Q8IZ20 524 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 AHI1Q8N157 1196 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 CCAR2Q8N163 923 aaKnown RBP11.21□□□□□ -0.61
VPS13D-210ENST00000489961 UCMAQ8WVF2 138 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 TBC1D31Q96DN5 1066 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 PEBP4Q96S96 227 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 PPP1R9BQ96SB3 815 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 DESI2Q9BSY9 194 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 IER2Q9BTL4 223 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 ZYG11BQ9C0D3 744 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 DHX35Q9H5Z1 703 aaKnown RBP11.21□□□□□ -0.61
VPS13D-210ENST00000489961 RETREG1Q9H6L5 497 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 ZWILCHQ9H900 591 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 RBM12Q9NTZ6 932 aaKnown RBP11.21□□□□□ -0.61
VPS13D-210ENST00000489961 ABCB8Q9NUT2 735 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 KIAA1522Q9P206 1035 aaPredicted RBP11.21□□□□□ -0.61
VPS13D-210ENST00000489961 GGA2Q9UJY4 613 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 CLEC4EQ9ULY5 219 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 TFR2Q9UP52 801 aa11.21□□□□□ -0.61
VPS13D-210ENST00000489961 A0A0C4DFX4 3053 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 BTNL10A8MVZ5 291 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 K7EQS6 105 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 PJA2O43164 708 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 CREB3O43889 395 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 ATG13O75143 517 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 RNF40O75150 1001 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 CNTN5O94779 1100 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 LRIG2O94898 1065 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 MOCS3O95396 460 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 HLA-FP30511 346 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 AVPR2P30518 371 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 HTR7P34969 479 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 SLC1A1P43005 524 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 IRAK1P51617 712 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 ZNF135P52742 658 aaPredicted RBP11.2□□□□□ -0.62
VPS13D-210ENST00000489961 NAP1L1P55209 391 aaKnown RBP11.2□□□□□ -0.62
VPS13D-210ENST00000489961 SEC13P55735 322 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 TPI1P60174 286 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 MRPS21P82921 87 aaKnown RBP11.2□□□□□ -0.62
VPS13D-210ENST00000489961 CCZ1BP86790 482 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 CCZ1P86791 482 aaPredicted RBP11.2□□□□□ -0.62
VPS13D-210ENST00000489961 MESP2Q0VG99 397 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 FZD5Q13467 585 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 SLC12A1Q13621 1099 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 EIF4HQ15056 248 aaKnown RBP11.2□□□□□ -0.62
VPS13D-210ENST00000489961 GEN1Q17RS7 908 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 ALFQ53S48 1182 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 MANEALQ5VSG8 457 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 DAB2IPQ5VWQ8 1189 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 PYROXD2Q8N2H3 581 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.2□□□□□ -0.62
VPS13D-210ENST00000489961 TMEM105Q8N8V8 129 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 WFDC5Q8TCV5 224 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 KCNV2Q8TDN2 545 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 TEKT4Q8WW24 435 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 HSPH1Q92598 858 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 EZH1Q92800 747 aaPredicted RBP11.2□□□□□ -0.62
VPS13D-210ENST00000489961 PDLIM2Q96JY6 352 aa11.2□□□□□ -0.62
VPS13D-210ENST00000489961 LRFN3Q9BTN0 628 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms