RNA–Protein interactions for RNA: ENST00000488426.5

NELFE-209, Transcript of negative elongation factor complex member E, humanhuman

TSL 5

Gene NELFE, Length 1,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-209ENST00000488426 TMPRSS4Q9NRS4 437 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.12□□□□□ -0.31
NELFE-209ENST00000488426 SLC38A8A6NNN8 435 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 I6L893 689 aaPredicted RBP13.12□□□□□ -0.31
NELFE-209ENST00000488426 CREB3O43889 395 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 SOAT2O75908 522 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 IFNB1P01574 187 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 ATF6P18850 670 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 HTR7P34969 479 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 PGFP49763 221 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 TPI1P60174 286 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 CREMQ03060 361 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 GPS1Q13098 491 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 PAFAH1B3Q15102 231 aaKnown RBP13.12□□□□□ -0.31
NELFE-209ENST00000488426 P3H1Q32P28 736 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 HIBCHQ6NVY1 386 aaPredicted RBP13.12□□□□□ -0.31
NELFE-209ENST00000488426 PCGF5Q86SE9 256 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 ZC3H18Q86VM9 953 aaKnown RBP13.12□□□□□ -0.31
NELFE-209ENST00000488426 UNC45BQ8IWX7 931 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 IQCKQ8N0W5 287 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 ANLNQ9NQW6 1124 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 MRPL17Q9NRX2 175 aaKnown RBP13.12□□□□□ -0.31
NELFE-209ENST00000488426 OSER1Q9NX31 292 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 MAFFQ9ULX9 164 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 TLR6Q9Y2C9 796 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 RAD54BQ9Y620 910 aa13.12□□□□□ -0.31
NELFE-209ENST00000488426 HACD1B0YJ81 288 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 ZDHHC11BP0C7U3 371 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 ZSCAN5DPP0CG00 497 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 SLC2A3P11169 496 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 HSD17B3P37058 310 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 GDF10P55107 478 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 GBE1Q04446 702 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 TAF10Q12962 218 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 RAB33AQ14088 237 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 MORF4L2Q15014 288 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 HSP90B2PQ58FF3 399 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 SLC45A4Q5BKX6 768 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 C4orf22Q6V702 233 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 PDZD4Q76G19 769 aaPredicted RBP13.11□□□□□ -0.31
NELFE-209ENST00000488426 FAM71DQ8N9W8 422 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 STKLD1Q8NE28 680 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 PDZD8Q8NEN9 1154 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 GPR152Q8TDT2 470 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 OVCA2Q8WZ82 227 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 OLFM3Q96PB7 478 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 QKIQ96PU8 341 aaKnown RBP eCLIP13.11□□□□□ -0.31
NELFE-209ENST00000488426 RUFY1Q96T51 708 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 C1QTNF1Q9BXJ1 281 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.11□□□□□ -0.31
NELFE-209ENST00000488426 DTLQ9NZJ0 730 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 FNIP2Q9P278 1114 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 TPX2Q9ULW0 747 aaKnown RBP13.11□□□□□ -0.31
NELFE-209ENST00000488426 SHOC2Q9UQ13 582 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 SSX2IPQ9Y2D8 614 aa13.11□□□□□ -0.31
NELFE-209ENST00000488426 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.1□□□□□ -0.31
NELFE-209ENST00000488426 SMAPO00193 183 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 DCLK1O15075 740 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 DCXO43602 365 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 RFPL2O75678 378 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 RARGP13631 454 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 ETS1P14921 441 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 HOXB8P17481 243 aaPredicted RBP13.1□□□□□ -0.31
NELFE-209ENST00000488426 PMS2P54278 862 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 UAP1Q16222 522 aaPredicted RBP13.1□□□□□ -0.31
NELFE-209ENST00000488426 LRIG3Q6UXM1 1119 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 PRUNE1Q86TP1 453 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 ZNF276Q8N554 614 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 CDK5RAP1Q96SZ6 601 aaKnown RBP13.1□□□□□ -0.31
NELFE-209ENST00000488426 USP29Q9HBJ7 922 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 RXFP1Q9HBX9 757 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 ETNK2Q9NVF9 386 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 OR12D3Q9UGF7 316 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 SFMBT1Q9UHJ3 866 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 ATP8A1Q9Y2Q0 1164 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 SPDYE4A6NLX3 237 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 FAM72CH0Y354 149 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 AGPSO00116 658 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 GPR37L1O60883 481 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 RPL22P35268 128 aaKnown RBP13.1□□□□□ -0.31
NELFE-209ENST00000488426 ACTN2P35609 894 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 NRG1Q02297 640 aaPredicted RBP13.1□□□□□ -0.31
NELFE-209ENST00000488426 SLC10A2Q12908 348 aaPredicted RBP13.1□□□□□ -0.31
NELFE-209ENST00000488426 TMEM31Q5JXX7 168 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 RNASEH2BQ5TBB1 312 aaKnown RBP13.1□□□□□ -0.31
NELFE-209ENST00000488426 FAM72AQ5TYM5 149 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 FAM72DQ6L9T8 149 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 HOOK3Q86VS8 718 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 FAM72BQ86X60 149 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 ZCCHC9Q8N567 271 aaKnown RBP13.1□□□□□ -0.31
NELFE-209ENST00000488426 GIPC2Q8TF65 315 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 UBLCP1Q8WVY7 318 aaPredicted RBP13.1□□□□□ -0.31
NELFE-209ENST00000488426 SLC39A13Q96H72 371 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 ZIM3Q96PE6 472 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 PABPC3Q9H361 631 aaKnown RBP13.1□□□□□ -0.31
NELFE-209ENST00000488426 C10orf88Q9H8K7 445 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 PAK5Q9P286 719 aa13.1□□□□□ -0.31
NELFE-209ENST00000488426 C2orf16Q68DN1 1984 aa13.09□□□□□ -0.31
NELFE-209ENST00000488426 KCNU1A8MYU2 1149 aa13.09□□□□□ -0.31
NELFE-209ENST00000488426 C2CD4DB7Z1M9 353 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms