RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 MTA1Q13330 715 aa21.13■□□□□ 0.97
HDAC4-209ENST00000487617 PTPRNQ16849 979 aa21.13■□□□□ 0.97
HDAC4-209ENST00000487617 FSCBQ5H9T9 825 aa21.13■□□□□ 0.97
HDAC4-209ENST00000487617 SPDYCQ5MJ68 293 aa21.13■□□□□ 0.97
HDAC4-209ENST00000487617 LYSMD4Q5XG99 296 aa21.13■□□□□ 0.97
HDAC4-209ENST00000487617 MMS22LQ6ZRQ5 1243 aa21.13■□□□□ 0.97
HDAC4-209ENST00000487617 ERMP1Q7Z2K6 904 aa21.13■□□□□ 0.97
HDAC4-209ENST00000487617 DHX40Q8IX18 779 aaKnown RBP21.13■□□□□ 0.97
HDAC4-209ENST00000487617 DEFB119Q8N690 84 aa21.13■□□□□ 0.97
HDAC4-209ENST00000487617 NPY6RQ99463 290 aa21.13■□□□□ 0.97
HDAC4-209ENST00000487617 RTKNQ9BST9 563 aa21.13■□□□□ 0.97
HDAC4-209ENST00000487617 TMEM245Q9H330 911 aa21.13■□□□□ 0.97
HDAC4-209ENST00000487617 CD93Q9NPY3 652 aa21.13■□□□□ 0.97
HDAC4-209ENST00000487617 CYP1A1P04798 512 aaPredicted RBP21.12■□□□□ 0.97
HDAC4-209ENST00000487617 TFE3P19532 575 aaPredicted RBP21.12■□□□□ 0.97
HDAC4-209ENST00000487617 CSKP41240 450 aa21.12■□□□□ 0.97
HDAC4-209ENST00000487617 RABGAP1LQ5R372 815 aa21.12■□□□□ 0.97
HDAC4-209ENST00000487617 OTUD1Q5VV17 481 aaPredicted RBP21.12■□□□□ 0.97
HDAC4-209ENST00000487617 TRIM72Q6ZMU5 477 aa21.12■□□□□ 0.97
HDAC4-209ENST00000487617 SND1Q7KZF4 910 aaKnown RBP eCLIP21.12■□□□□ 0.97
HDAC4-209ENST00000487617 ZNF366Q8N895 744 aa21.12■□□□□ 0.97
HDAC4-209ENST00000487617 PRCCQ92733 491 aaPredicted RBP21.12■□□□□ 0.97
HDAC4-209ENST00000487617 TTC17Q96AE7 1141 aa21.12■□□□□ 0.97
HDAC4-209ENST00000487617 SIPA1Q96FS4 1042 aa21.12■□□□□ 0.97
HDAC4-209ENST00000487617 RXFP3Q9NSD7 469 aa21.12■□□□□ 0.97
HDAC4-209ENST00000487617 PIGVQ9NUD9 493 aa21.12■□□□□ 0.97
HDAC4-209ENST00000487617 KIAA1522Q9P206 1035 aaPredicted RBP21.12■□□□□ 0.97
HDAC4-209ENST00000487617 INTS6Q9UL03 887 aaKnown RBP21.12■□□□□ 0.97
HDAC4-209ENST00000487617 RALGAPA1Q6GYQ0 2036 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 SLC30A4O14863 429 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 NDUFS2O75306 463 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 MOCS3O95396 460 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 ASLP04424 464 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 ZNF165P49910 485 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 COPAP53621 1224 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 DEUP1Q05D60 604 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 CAMK2GQ13555 558 aaPredicted RBP21.11■□□□□ 0.97
HDAC4-209ENST00000487617 AUHQ13825 339 aaKnown RBP21.11■□□□□ 0.97
HDAC4-209ENST00000487617 PITRM1Q5JRX3 1037 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 TTC39BQ5VTQ0 682 aaPredicted RBP21.11■□□□□ 0.97
HDAC4-209ENST00000487617 FBXL22Q6P050 247 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 METTL3Q86U44 580 aaKnown RBP21.11■□□□□ 0.97
HDAC4-209ENST00000487617 CIR1Q86X95 450 aaPredicted RBP21.11■□□□□ 0.97
HDAC4-209ENST00000487617 CACUL1Q86Y37 369 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 OR2T3Q8NH03 318 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 RPRD1AQ96P16 312 aaPredicted RBP21.11■□□□□ 0.97
HDAC4-209ENST00000487617 TBCBQ99426 244 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 ADAM33Q9BZ11 813 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 WDCPQ9H6R7 721 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 HS3ST4Q9Y661 456 aa21.11■□□□□ 0.97
HDAC4-209ENST00000487617 KHNYNO15037 678 aaKnown RBP21.1■□□□□ 0.97
HDAC4-209ENST00000487617 PAGE1O75459 146 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 F9P00740 461 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 ACADMP11310 421 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 FLT3P36888 993 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 CXCR3P49682 368 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 ST8SIA6P61647 398 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 KLHL40Q2TBA0 621 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 SLC25A52Q3SY17 297 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 BRMS1LQ5PSV4 323 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 SYT12Q8IV01 421 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 CCAR2Q8N163 923 aaKnown RBP21.1■□□□□ 0.97
HDAC4-209ENST00000487617 SLC30A5Q8TAD4 765 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 NT5C3BQ969T7 300 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 PGAP3Q96FM1 320 aaPredicted RBP21.1■□□□□ 0.97
HDAC4-209ENST00000487617 TKTL2Q9H0I9 626 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 SIK2Q9H0K1 926 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 ITM2CQ9NQX7 267 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 USP36Q9P275 1121 aaKnown RBP21.1■□□□□ 0.97
HDAC4-209ENST00000487617 SUN2Q9UH99 717 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 TMEM59LQ9UK28 342 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 VANGL2Q9ULK5 521 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 THADAQ6YHU6 1953 aa21.1■□□□□ 0.97
HDAC4-209ENST00000487617 ATXN2Q99700 1313 aaKnown RBP21.09■□□□□ 0.97
HDAC4-209ENST00000487617 A0A1B0GVM2 712 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 TCAF2A6NFQ2 919 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 PATE3B3GLJ2 98 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 TEX33O43247 280 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 ADCY5O95622 1261 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 MMP8P22894 467 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 ITPKAP23677 461 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 CD6P30203 668 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 GGCXP38435 758 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 DPP6P42658 865 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 TPMTP51580 245 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 LIMK1P53667 647 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 CENPCQ03188 943 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 ZNF33AQ06730 810 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 FILIP1LQ4L180 1135 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 PHLDB2Q86SQ0 1253 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 IGSF8Q969P0 613 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 TOE1Q96GM8 510 aaKnown RBP21.09■□□□□ 0.97
HDAC4-209ENST00000487617 PCDHB18PQ96TA0 734 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 C11orf70Q9BRQ4 267 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 FUCA2Q9BTY2 467 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 RTN4Q9NQC3 1192 aaKnown RBP21.09■□□□□ 0.97
HDAC4-209ENST00000487617 PRSS16Q9NQE7 514 aa21.09■□□□□ 0.97
HDAC4-209ENST00000487617 METTL5Q9NRN9 209 aaKnown RBP21.09■□□□□ 0.97
HDAC4-209ENST00000487617 SEPT11Q9NVA2 429 aaKnown RBP21.09■□□□□ 0.97
HDAC4-209ENST00000487617 TMEM51Q9NW97 253 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms